Annealing complementary primers: Difference between revisions

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[[Endy:Annealing complementary primers]]<br>
[[Endy:Annealing complementary primers]]<br>
[[Silver: Oligonucleotide Inserts|Silver:Annealing complementary primers]]<br>
[[Silver: Oligonucleotide Inserts|Silver:Annealing complementary primers]]<br>
==Method==


===Primer reconstitution===
When the primers arrive, redissolve them in 50 mM Tris buffer to yield a concentration of ~800 ng/&mu;l.  See this page on [[Reconstituting primers | reconstituting primers]] for more information.
===Annealing Mix===
*For the annealing mix one recipe that works is as follows -
**8 &mu;L of each of the concentrated primers.
**4 &mu;L of salt solution (10 mM NaCl)
**20 &mu;L of water
===Option 1===
Anneal the primers by heating them at least 5&deg;C above their melting point and cooling them down slowly in stages using a [[Endy:Thermocyclers|Thermocycler]].  Melting temperature calculations can best be done using software such as [[VectorNTI]] or data may come with the primers themselves.
===Option 2===
A simpler approach is to add the above mix in a PCR tube to a beaker of boiling water and just allow the water to cool down naturally.  Most primers pairs with length less than 100bp should be fully melted at 100<sup>o</sup>C and certainly any non-specific binding should be melted at that temperature.


==Notes==
==Notes==
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