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Pan:Methods: Difference between revisions
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''(Multiplex Small RNA sequencing, MSR-seq)'' Watkins, C.P., W. Zhang, A.C. Wylder, C.D. Katanski*, Tao Pan*: A multiplex platform for small RNA sequencing elucidates multifaceted tRNA stress response and translational regulation, ''Nature Communications'' 13, 2491 (2022). | ''(Multiplex Small RNA sequencing, MSR-seq)'' Watkins, C.P., W. Zhang, A.C. Wylder, C.D. Katanski*, Tao Pan*: A multiplex platform for small RNA sequencing elucidates multifaceted tRNA stress response and translational regulation, ''Nature Communications'' 13, 2491 (2022). | ||
''(Demethylase | ''(Demethylase screening)'' Wang, Y.U., C.D. Katanski, C. Watkins, J.N. Pan, Q. Dai, Z-X. Jiang, Tao Pan*: A High-throughput Screening Method for Evolving a Demethylase Enzyme with Improved and New Functionalities, ''Nucl. Acids Res.'' 49, e30 (2021). | ||
''(Microbiome)'' Schwartz, M.H., H.P. Wang, J.N. Pan, W.C. Clark, S. Cui, M.J. Eckwahl, D.W. Pan, M. Parisien, S.M. Owens, B.L. Cheng, K. Martinez, J.B. Xu, E.B. Chang, Tao Pan*, A.M. Eren*: Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis, ''Nature Communications'' 9:5353, p.1-13 (2018). | ''(Microbiome)'' Schwartz, M.H., H.P. Wang, J.N. Pan, W.C. Clark, S. Cui, M.J. Eckwahl, D.W. Pan, M. Parisien, S.M. Owens, B.L. Cheng, K. Martinez, J.B. Xu, E.B. Chang, Tao Pan*, A.M. Eren*: Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis, ''Nature Communications'' 9:5353, p.1-13 (2018). | ||
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'''RNA modification''' | '''RNA modification''' | ||
''(Nanopore simultaneous m6A and pseudouridine)'' Huang, S-H., A.C. Wylder, Tao Pan*: Simultaneous mRNA m6A and Pseudouridine Nanopore Profiling Reveals Coordination in Translation, ''Nature Biotech.'' in press (2024). | |||
''(Queuosine and 2-thio)'' Katanski, C.D., C.P. Watkins, W. Zhang, M. Reyer, S. Miller, Tao Pan*: Analysis of queuosine and 2-thio tRNA modifications by high throughput sequencing, ''Nucl. Acids Res.'' 50, e99 (2022). | ''(Queuosine and 2-thio)'' Katanski, C.D., C.P. Watkins, W. Zhang, M. Reyer, S. Miller, Tao Pan*: Analysis of queuosine and 2-thio tRNA modifications by high throughput sequencing, ''Nucl. Acids Res.'' 50, e99 (2022). | ||
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'''tRNA biology''' | '''tRNA biology''' | ||
''(tRNA m1A modification, qPCR)'' Zhang, W., H. Chen, M. Sobczyk, D. Krochmal, C.D. Katanski, M. Assari, A. Chen, Y. Hou, Q. Dai, Tao Pan*: Quantification of tRNA m1A modification by templated-ligation qPCR, ''RNA'', in press (2024). | |||
''(tRNA microarray, misacylation)'' Schwartz*, M.H., Tao Pan*: Determining the fidelity of tRNA aminoacylation via microarrays, ''Methods'' 113, 27-33 (2017). | ''(tRNA microarray, misacylation)'' Schwartz*, M.H., Tao Pan*: Determining the fidelity of tRNA aminoacylation via microarrays, ''Methods'' 113, 27-33 (2017). | ||
