Pan:Methods: Difference between revisions

Pan:Methods (view source)

299 bytes added , 29 November 2023

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 '''tRNA-seq and small RNA-seq'''
+''(Single-read analysis of coordination)'' Hernandez-Alias, X., C.D. Katanski, W. Zhang, M. Assari, C.P. Watkins, M.H. Schaefer, L. Serrano, Tao Pan*: Single-read tRNA-seq analysis reveals coordination of tRNA modification and aminoacylation and fragmentation, ''Nucl. Acids Res.'' 51, e17 (2023).
 ''(Multiplex Small RNA sequencing, MSR-seq)'' Watkins, C.P., W. Zhang, A.C. Wylder, C.D. Katanski*, Tao Pan*: A multiplex platform for small RNA sequencing elucidates multifaceted tRNA stress response and translational regulation, ''Nature Communications'' 13, 2491 (2022).
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 '''RNA modification'''
-''(Queuosine and 2-thio)'' Katanski, C.D., C.P. Watkins, W. Zhang, M. Reyer, S. Miller, Tao Pan*: Analysis of queuosine and 2-thio tRNA modifications by high throughput sequencing, ''Nucl. Acids Res.'' in press (2022).
+''(Queuosine and 2-thio)'' Katanski, C.D., C.P. Watkins, W. Zhang, M. Reyer, S. Miller, Tao Pan*: Analysis of queuosine and 2-thio tRNA modifications by high throughput sequencing, ''Nucl. Acids Res.'' 50, e99 (2022).
 ''(Nanopore pseudouridine)'' Huang, S. W. Zhang, C.D. Katanski, D. Dersh, Q. Dai, K. Lolans, J. Yewdell, A.M. Eren, Tao Pan*: Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling, ''Genome Biology'' 22, 330 (2021).