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Pan:Methods: Difference between revisions
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'''tRNA-seq and small RNA-seq''' | '''tRNA-seq and small RNA-seq''' | ||
''(Multiplex Small RNA sequencing, MSR-seq)'' Watkins, C.P., W. Zhang, A.C. Wylder, C.D. Katanski*, Tao Pan*: A multiplex platform for small RNA sequencing elucidates multifaceted tRNA stress response and translational regulation, Nature Communications 13, 2491 (2022). | ''(Multiplex Small RNA sequencing, MSR-seq)'' Watkins, C.P., W. Zhang, A.C. Wylder, C.D. Katanski*, Tao Pan*: A multiplex platform for small RNA sequencing elucidates multifaceted tRNA stress response and translational regulation, ''Nature Communications'' 13, 2491 (2022). | ||
''(Demethylase screeing)'' Wang, Y.U., C.D. Katanski, C. Watkins, J.N. Pan, Q. Dai, Z-X. Jiang, Tao Pan*: A High-throughput Screening Method for Evolving a Demethylase Enzyme with Improved and New Functionalities, Nucl. Acids Res. | ''(Demethylase screeing)'' Wang, Y.U., C.D. Katanski, C. Watkins, J.N. Pan, Q. Dai, Z-X. Jiang, Tao Pan*: A High-throughput Screening Method for Evolving a Demethylase Enzyme with Improved and New Functionalities, ''Nucl. Acids Res.'' 49, e30 (2021). | ||
''(Microbiome)'' Schwartz, M.H., H.P. Wang, J.N. Pan, W.C. Clark, S. Cui, M.J. Eckwahl, D.W. Pan, M. Parisien, S.M. Owens, B.L. Cheng, K. Martinez, J.B. Xu, E.B. Chang, Tao Pan*, A.M. Eren*: Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis, ''Nature Communications'' 9:5353, p.1-13 (2018). | ''(Microbiome)'' Schwartz, M.H., H.P. Wang, J.N. Pan, W.C. Clark, S. Cui, M.J. Eckwahl, D.W. Pan, M. Parisien, S.M. Owens, B.L. Cheng, K. Martinez, J.B. Xu, E.B. Chang, Tao Pan*, A.M. Eren*: Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis, ''Nature Communications'' 9:5353, p.1-13 (2018). | ||
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'''RNA modification''' | '''RNA modification''' | ||
''(Queuosine and 2-thio)'' Katanski, C.D., C.P. Watkins, W. Zhang, M. Reyer, S. Miller, Tao Pan*: Analysis of queuosine and 2-thio tRNA modifications by high throughput sequencing, Nucl. Acids Res. | ''(Queuosine and 2-thio)'' Katanski, C.D., C.P. Watkins, W. Zhang, M. Reyer, S. Miller, Tao Pan*: Analysis of queuosine and 2-thio tRNA modifications by high throughput sequencing, ''Nucl. Acids Res.'' in press (2022). | ||
''(Nanopore pseudouridine)'' Huang, S. W. Zhang, C.D. Katanski, D. Dersh, Q. Dai, K. Lolans, J. Yewdell, A.M. Eren, Tao Pan*: Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling, Genome Biology 22, 330 (2021). | ''(Nanopore pseudouridine)'' Huang, S. W. Zhang, C.D. Katanski, D. Dersh, Q. Dai, K. Lolans, J. Yewdell, A.M. Eren, Tao Pan*: Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling, ''Genome Biology'' 22, 330 (2021). | ||
''(Glycosylated queuosine)'' Zhang, W., R-Y. Xu, Z. Matuszek, Z. Cai, Tao Pan*: Detection and quantification of glycosylated queuosine modified tRNAs by acid denaturing and APB gels, RNA 26, 1291-1298 (2020). | ''(Glycosylated queuosine)'' Zhang, W., R-Y. Xu, Z. Matuszek, Z. Cai, Tao Pan*: Detection and quantification of glycosylated queuosine modified tRNAs by acid denaturing and APB gels, ''RNA'' 26, 1291-1298 (2020). | ||
''(CLAP)'' Zhang, W., M.J. Eckwahl, K.I. Zhou, Tao Pan*: Sensitive and quantitative probing of pseudouridine modification in mRNA and long non-coding RNA, ''RNA'' 25, 1218-1225 (2019). | ''(CLAP)'' Zhang, W., M.J. Eckwahl, K.I. Zhou, Tao Pan*: Sensitive and quantitative probing of pseudouridine modification in mRNA and long non-coding RNA, ''RNA'' 25, 1218-1225 (2019). | ||
