198
edits
Pan:Methods: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
no edit summary
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
'''DM-tRNA-seq (demethylase tRNA-seq) | '''DM-tRNA-seq (demethylase tRNA-seq)''' | ||
''(Microbiome)'' Schwartz, M.H., H.P. Wang, J.N. Pan, W.C. Clark, S. Cui, M.J. Eckwahl, D.W. Pan, M. Parisien, S.M. Owens, B.L. Cheng, K. Martinez, J.B. Xu, E.B. Chang, Tao Pan*, A.M. Eren*: Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis, ''Nature Communications'' 9:5353, p.1-13 (2018). | ''(Microbiome)'' Schwartz, M.H., H.P. Wang, J.N. Pan, W.C. Clark, S. Cui, M.J. Eckwahl, D.W. Pan, M. Parisien, S.M. Owens, B.L. Cheng, K. Martinez, J.B. Xu, E.B. Chang, Tao Pan*, A.M. Eren*: Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis, ''Nature Communications'' 9:5353, p.1-13 (2018). | ||
| Line 13: | Line 13: | ||
'''RNA modification | '''RNA modification''' | ||
''(m6A reader protein)'' Zhou, K.I., N. Liu & Tao Pan*: Identification of N6-methyladenosine reader proteins, ''Methods'' 126, 105-111 (2017). | ''(m6A reader protein)'' Zhou, K.I., N. Liu & Tao Pan*: Identification of N6-methyladenosine reader proteins, ''Methods'' 126, 105-111 (2017). | ||
| Line 30: | Line 30: | ||
'''tRNA biology | '''tRNA biology''' | ||
''(tRNA microarray, misacylation)'' Schwartz*, M.H., Tao Pan*: Determining the fidelity of tRNA aminoacylation via microarrays, ''Methods'' 113, 27-33 (2017). | ''(tRNA microarray, misacylation)'' Schwartz*, M.H., Tao Pan*: Determining the fidelity of tRNA aminoacylation via microarrays, ''Methods'' 113, 27-33 (2017). | ||
| Line 64: | Line 64: | ||
''(Metal ion in rate-liming step)'' Fang, X-W., P. Thiyagarajan, T.R. Sosnick* & Tao Pan*: The rate-limiting step in the folding of a large ribozyme without kinetic traps. ''Proc. Natl. Acad. Sci. USA'' 99, 8518-8523 (2002). | ''(Metal ion in rate-liming step)'' Fang, X-W., P. Thiyagarajan, T.R. Sosnick* & Tao Pan*: The rate-limiting step in the folding of a large ribozyme without kinetic traps. ''Proc. Natl. Acad. Sci. USA'' 99, 8518-8523 (2002). | ||
''(SAXS)'' Fang, X-W., K.L. Littrell, X-J. Yang, S.J. Henderson, S. Seifert, P. Thiyagarajan, Tao Pan* & T.R. Sosnick*: Mg2+-dependent compaction and folding of the yeast tRNAPhe and the catalytic domain of the B. subtilis RNase P RNA determined by Small-angle X-ray scattering. Biochemistry 39, 11107-11113 (2000). | ''(SAXS)'' Fang, X-W., K.L. Littrell, X-J. Yang, S.J. Henderson, S. Seifert, P. Thiyagarajan, Tao Pan* & T.R. Sosnick*: Mg2+-dependent compaction and folding of the yeast tRNAPhe and the catalytic domain of the B. subtilis RNase P RNA determined by Small-angle X-ray scattering. ''Biochemistry'' 39, 11107-11113 (2000). | ||
''(Quantitative denaturation)'' Shelton, V., T.R. Sosnick* & Tao Pan*: The applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding. Biochemistry 38, 16831-16839 (1999). | ''(Quantitative denaturation)'' Shelton, V., T.R. Sosnick* & Tao Pan*: The applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding. ''Biochemistry'' 38, 16831-16839 (1999). | ||
''(Kinetic framework)'' Fang, X-W., Tao Pan* & T.R. Sosnick*: Mg2+-dependent folding of a large ribozyme without kinetic traps. Nature Str. Mol. Biol. 6, 1091-1095 (1999). | ''(Kinetic framework)'' Fang, X-W., Tao Pan* & T.R. Sosnick*: Mg2+-dependent folding of a large ribozyme without kinetic traps. ''Nature Str. Mol. Biol.'' 6, 1091-1095 (1999). | ||
''(Spectroscopy)'' Tao Pan* & T.R. Sosnick*: Intermediates and kinetic traps in the folding of a large ribozyme revealed by CD spectroscopy and catalytic activity. Nature Str. Mol. Biol. 4, 931-938 (1997). | ''(Spectroscopy)'' Tao Pan* & T.R. Sosnick*: Intermediates and kinetic traps in the folding of a large ribozyme revealed by CD spectroscopy and catalytic activity. ''Nature Str. Mol. Biol.'' 4, 931-938 (1997). | ||
<font color=#000000 size=2> [[Pan Lab |Main]] | [[Pan:What we do|What we do]] | [[Pan:Who we are|Who we are]] | [[Pan:Press|Press]] | [[Pan:Publications|Publications]] | [[Pan:Methods|Methods]] | [[Pan:Links|Links]] | [[Pan:Contact us|Contact us]] | <font color=#000000 size=2> [[Pan Lab |Main]] | [[Pan:What we do|What we do]] | [[Pan:Who we are|Who we are]] | [[Pan:Press|Press]] | [[Pan:Publications|Publications]] | [[Pan:Methods|Methods]] | [[Pan:Links|Links]] | [[Pan:Contact us|Contact us]] | ||
