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Pan:Methods: Difference between revisions
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'''DM-tRNA-seq (demethylase tRNA-seq):''' | '''DM-tRNA-seq (demethylase tRNA-seq):''' | ||
''(Microbiome)'' Schwartz, M.H., H.P. Wang, J.N. Pan, W.C. Clark, S. Cui, M.J. Eckwahl, D.W. Pan, M. Parisien, S.M. Owens, B.L. Cheng, K. Martinez, J.B. Xu, E.B. Chang, Tao Pan*, A.M. Eren*: Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis, ''Nature Communications'' 9:5353, p.1-13 (2018). | ''(Microbiome)'' Schwartz, M.H., H.P. Wang, J.N. Pan, W.C. Clark, S. Cui, M.J. Eckwahl, D.W. Pan, M. Parisien, S.M. Owens, B.L. Cheng, K. Martinez, J.B. Xu, E.B. Chang, Tao Pan*, A.M. Eren*: Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis, ''Nature Communications'' 9:5353, p.1-13 (2018). | ||
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'''RNA modification:''' | '''RNA modification:''' | ||
''(m6A reader protein)'' Zhou, K.I., N. Liu & Tao Pan*: Identification of N6-methyladenosine reader proteins, ''Methods'' 126, 105-111 (2017). | ''(m6A reader protein)'' Zhou, K.I., N. Liu & Tao Pan*: Identification of N6-methyladenosine reader proteins, ''Methods'' 126, 105-111 (2017). | ||
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'''tRNA biology:''' | '''tRNA biology:''' | ||
''(tRNA microarray, misacylation)'' Schwartz*, M.H., Tao Pan*: Determining the fidelity of tRNA aminoacylation via microarrays, ''Methods'' 113, 27-33 (2017). | ''(tRNA microarray, misacylation)'' Schwartz*, M.H., Tao Pan*: Determining the fidelity of tRNA aminoacylation via microarrays, ''Methods'' 113, 27-33 (2017). | ||
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'''Co-transcriptional RNA folding:''' | '''Co-transcriptional RNA folding:''' | ||
''(Riboswitch)'' Perdrizet, G.A., I. Artsimovitch, R. Furman, T. R. Sosnick*, Tao Pan*: Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch, ''Proc. Natl. Acad. Sci. USA'' 109, 3323-3328 (2012). | |||
''(Riboswitch)'' Wong, T.N. & Tao Pan*: RNA Folding during Transcription: Protocols and Studies. ''Methods in Enzymology'' 468, 167-193 (2009). | |||
Wong, T.N. & Tao Pan*: RNA Folding during Transcription: Protocols and Studies. ''Methods in Enzymology'' 468, 167-193 (2009). | |||
Tao Pan*, I. Artsimovitch, X-W. Fang, R. Landick & T.R. Sosnick*: Folding of a large ribozyme during transcription and the effect of the elongation factor NusA. ''Proc. Natl. Acad. Sci. USA'' 96, 9545-9550 (1999). | ''(Ribozyme)'' Tao Pan*, I. Artsimovitch, X-W. Fang, R. Landick & T.R. Sosnick*: Folding of a large ribozyme during transcription and the effect of the elongation factor NusA. ''Proc. Natl. Acad. Sci. USA'' 96, 9545-9550 (1999). | ||
