Uploads by Brandon E. Barker
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | Description |
|---|---|---|---|---|
| 01:04, 17 April 2014 | Yn605.grRules (file) |  |
22 KB | The GPR rules from Yeast 6.05. |
| 00:55, 17 April 2014 | Genedata 85.txt (file) |  |
172 KB | 85% maximum growth rate, from Lee et al. 2012 |
| 00:55, 17 April 2014 | Genedata 75.txt (file) | |
172 KB | 75% maximum growth rate, from Lee et al. 2012 |
| 16:49, 10 September 2013 | DeepProtLFQ.csv (file) | |
885 KB | Deep Proteomic expression file. |
| 16:47, 10 September 2013 | ProtLFQ.csv (file) | |
3.16 MB | Proteomic expression file |
| 16:43, 10 September 2013 | NCI60 labels.csv (file) | |
1 KB | CORE to Proteomic NCI-60 cell line name map |
| 16:36, 10 September 2013 | Rec2.genes (file) | |
12 KB | List of model genes in Recon 2; there there are some redundancies as the isoform identifier has been truncated. |
| 15:46, 10 September 2013 | Barker Alberta1.jpg (file) |  |
205 KB | |
| 16:17, 23 August 2013 | Gholami Table S8 mRNA.csv.lzma (file) | |
14.51 MB | Just a CSV version of Table S8 found in Gholami et al., which contains mRNA expression data for the NCI-60 panel. This file is compressed with LZMA. |
| 15:25, 23 August 2013 | Expanded IPI Listing.csv (file) | |
5.09 MB | Expanded list of protein accessions and their intensities for all matching proteins (not just the best match). Based on Supplemental Table S3 - Protein group table, from: Gholami, A. M., Hahne, H., Wu, Z., Auer, F. J., Meng, C., Wilhelm, M., & Kuster, B. |
| 02:06, 23 August 2013 | Entrez and IPI unique.csv (file) | |
460 KB | Entrez Gene to IPI ID mapping; created from the list of IPI IDs in the NCI60 proteomic dataset from Gholami et al, as well as genes from Human Recon 2.02. The conversion was handled by DAVID (http://david.abcc.ncifcrf.gov/) on 08/22/2013. |
