Smolke:Tech 28Aug06

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Tech talk references: 28 August 2006

Presenter: Josh

Static vs. Dynamic Control

  1. Nevoigt E, Kohnke J, Fischer CR, Alper H, Stahl U, and Stephanopoulos G. Engineering of promoter replacement cassettes for fine-tuning of gene expression in Saccharomyces cerevisiae. Appl Environ Microbiol. 2006 Aug;72(8):5266-73. DOI:10.1128/AEM.00530-06 | PubMed ID:16885275 | HubMed [nevoigt]
  2. Alper H, Fischer C, Nevoigt E, and Stephanopoulos G. Tuning genetic control through promoter engineering. Proc Natl Acad Sci U S A. 2005 Sep 6;102(36):12678-83. DOI:10.1073/pnas.0504604102 | PubMed ID:16123130 | HubMed [alper]
  3. Lee SK and Keasling JD. A propionate-inducible expression system for enteric bacteria. Appl Environ Microbiol. 2005 Nov;71(11):6856-62. DOI:10.1128/AEM.71.11.6856-6862.2005 | PubMed ID:16269719 | HubMed [lee]
  4. Farmer WR and Liao JC. Improving lycopene production in Escherichia coli by engineering metabolic control. Nat Biotechnol. 2000 May;18(5):533-7. DOI:10.1038/75398 | PubMed ID:10802621 | HubMed [farmer]
  5. Klipp E, Heinrich R, and Holzh├╝tter HG. Prediction of temporal gene expression. Metabolic opimization by re-distribution of enzyme activities. Eur J Biochem. 2002 Nov;269(22):5406-13. DOI:10.1046/j.1432-1033.2002.03223.x | PubMed ID:12423338 | HubMed [klipp]
  6. Becskei A and Serrano L. Engineering stability in gene networks by autoregulation. Nature. 2000 Jun 1;405(6786):590-3. DOI:10.1038/35014651 | PubMed ID:10850721 | HubMed [becskei]
  7. Austin DW, Allen MS, McCollum JM, Dar RD, Wilgus JR, Sayler GS, Samatova NF, Cox CD, and Simpson ML. Gene network shaping of inherent noise spectra. Nature. 2006 Feb 2;439(7076):608-11. DOI:10.1038/nature04194 | PubMed ID:16452980 | HubMed [austin]
  8. Rosenfeld N, Elowitz MB, and Alon U. Negative autoregulation speeds the response times of transcription networks. J Mol Biol. 2002 Nov 8;323(5):785-93. DOI:10.1016/s0022-2836(02)00994-4 | PubMed ID:12417193 | HubMed [rosenfeld]
  9. Zaslaver A, Mayo AE, Rosenberg R, Bashkin P, Sberro H, Tsalyuk M, Surette MG, and Alon U. Just-in-time transcription program in metabolic pathways. Nat Genet. 2004 May;36(5):486-91. DOI:10.1038/ng1348 | PubMed ID:15107854 | HubMed [zaslaver]
  10. Reinke H and Gatfield D. Genome-wide oscillation of transcription in yeast. Trends Biochem Sci. 2006 Apr;31(4):189-91. DOI:10.1016/j.tibs.2006.02.001 | PubMed ID:16500104 | HubMed [reinke]
  11. Klevecz RR, Bolen J, Forrest G, and Murray DB. A genomewide oscillation in transcription gates DNA replication and cell cycle. Proc Natl Acad Sci U S A. 2004 Feb 3;101(5):1200-5. DOI:10.1073/pnas.0306490101 | PubMed ID:14734811 | HubMed [klevecz]
  12. Tu BP, Kudlicki A, Rowicka M, and McKnight SL. Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes. Science. 2005 Nov 18;310(5751):1152-8. DOI:10.1126/science.1120499 | PubMed ID:16254148 | HubMed [tu]
All Medline abstracts: PubMed | HubMed