Rich Lab:Publications

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(bolded authors are Rich Lab members)

Trubl G, Solonenko N, Chittick L, Solonenko SA, Rich VI†, Sullivan MB†. 2016. Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient. PeerJ 4:e1999 († co-corresponding authors).

Brum JR* & Ignacio-Espinoza JC* & Kim E-H*, Trubl G, Jones R, Roux S, VerBerkmoes N, Rich VI† & Sullivan MB†. 2016. Illuminating structural proteins in viral ‘dark matter’ with metaproteomics. Proceedings of the National Academy of Sciences, USA. Advanced Online Publication. (*co-first authors,† co-corresponding authors).

Angly FE, Pantos O, Morgan TC, Rich VI, Bourne DG, Mercurio P, Negri AP, Tyson GW. 2016. Diuron tolerance and potential degradation in pelagic microbiomes from the Great Barrier Reef lagoon. Peer J. 4:e1758.

Angly FE, Heath C, Morgan TC, Tonin H, Rich V, Schaffelke B, Bourne DG, Tyson GW. 2016. Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events. PeerJ 4:e1511; DOI 10.7717/peerj.1511

Hodgkins SB, Chanton JP, Langford LC, McCalley CK, Saleska SR, Rich VI, Crill PM, Cooper WT. 2015. Soil incubations reproduce field methane dynamics in a subarctic wetland. Biogeochemistry. 126: 241-249.

Hodgkins SB, Tfaily MM, McCalley CK, Logan T, Crill PM, Saleska SR, Rich VI, Chanton JP. 2014. Changes in peat chemistry associated with permafrost thaw increase greenhouse gas production. Proceedings of the National Academy of Sciences, USA. doi: 10.1073/pnas.1314641111

Woodcroft* BJ, Mondav* R, Kim E-H, Hodgkins SB, Crill PM, Chanton JP, VerBerkmoes N, Saleska SR, Hugenholtz P, Rich VI, Tyson GW. 2014. A novel archaeal lineage drives methane flux in thawing permafrost. Nature Communications. 5:3212.

Rich, V, Pham V, Eppley J, Shi Y, DeLong EF. 2011. Time-series analyses of Monterey Bay coastal microbial picoplankton using a ‘genome proxy’ microarray. Environmental Microbiology. 13: 116-134.

Rich, V, Konstantinidis K, DeLong EF. 2008. Design and testing of “genome proxy” microarrays to profile marine microbial communities. Environmental Microbiology, 10: 506-521.

• Faculty of 1000 “Must Read” paper, 4 Feb 2008.

DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, Frigaard NU, Martinez A, Sullivan MB, Edwards R, Brito BR, Chisholm SW, Karl DM. 2006. Community genomics among stratified microbial assemblages in the ocean's interior. Science. 311:496-503.

• Faculty of 1000 “Recommended” paper, 17 Feb 2006

Horz, H-P, Rich V, Avrahami S, and Bohannan BJ. 2005. Methane-oxidizing bacteria in a California upland grassland soil: diversity and response to simulated global change. Applied and Environmental Microbiology. 71(5): 2642-2652.