Rich Lab:Informatics Tools

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Microbiome Tools

• Microbiome Analysis Tools Developed at EMBL: A web portal for computational microbiome analysis tools.

Proteomic Tools

• Ben's spectra divvying Script
• SequenceServer
• Trans-Proteomic Pipeline (TPP)
• Scaffold Download
• Proteome Software: Scaffold Download
• PNNL MS Tools
• Software from the Tabb Lab
• The Global Proteome Machine: Tutorial
• The Chorus Project
• ProteoWizard
• Venn Diagram Plotter
• SignalP
• GLAMM - metabolic networks
• Instructions for installing and running DTASelect - Cravatt Lab
• Cytoscape KGML Reader
• Galaxy-P
• Proteomics with Galaxy

Other Tools

• A great tool for choosing colors for figures in papers, presentations, etc.