RWE083005
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Read/skim Haussler papers
Ultraconserved Elements in the Human Genome
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
Read/skim Kelly thesis proposal
Entire proposal
here
, relevant sections are 3.5 and 4.3.
Also, in wiki format and slightly updated
here
.
Read/skim Alon paper
Optimality and evolutionary tuning of the expression level of a protein
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