Quackenbush Lab:Publications

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Selected Publications

  • Aryee M, Quackenbush J

An Optimized Predictive Strategy for Interactome Mapping


  • Danley PD, Mullen SP, Liu F, Nene V, Quackenbush J, Shaw KL

A cricket Gene Index: a genomic resource for studying neurobiology, speciation, and molecular evolution.

BMC Genomics. 2007 Apr 25;8:109.

  • Mar JC, Rubio R, Quackenbush J.

Inferring steady state single-cell gene expression distributions from analysis of mesoscopic samples.

Genome Biol. 2006;7(12):R119.

  • Chittenden TW, Culhane C, Howe EA, Sultana R, Taylor JM, Holmes C, Quackenbush J.

Somatic Mutation of TGF-β1 Regulated Genes in Human Cancers


  • Chen T, Yang I, Irby R, Shain KH, Wang HG, Quackenbush J, Coppola D, Cheng JQ, Yeatman TJ.

Regulation of caspase expression and apoptosis by adenomatous polyposis coli

Cancer Res. Aug 1;63(15):4368-74 2003.

  • Agrawal D, Chen T, Irby R, Quackenbush J, Chambers AF, Szabo M, Coppola D, Yeatman TJ.

Osteopontin Identified as Lead Marker of Colon Cancer Progression Using Expression Profiling on Pooled Samples

J Natl Cancer Inst. 2002 Apr 3;94(7):513-21.

  • Hegde P, Qi R, Gaspard R, Abernathy K, Dharap S, Earle-Hughes J, Gay C, Nwokekeh NU, Chen T, Saeed AI, Sharov V, Lee NH, Yeatman TJ, and Quackenbush J.

Identification of tumor markers in models of human colorectal cancer using a 19,200 element cDNA microarray.

Cancer Res. Nov 1, 2001.