OTU Identification

Overview

• General Workflow
• 16S rRNA sequence identification
  • grab_16S_reads.pl
  • general workflow
  • GOS data results
• 16S read multiple sequence alignment
  • Algorithm consideration
  • Algorithm performance/results
• Phylogenetic reconstruction
  • Algorithm consideration
    • FastTree
    • RAxML
  • Algorithm performance/results
• Identification of OTU (MOTHUR)

Emails

• • INFERNAL MSA Tests
  • Initial Phylogenetic Analysis Tests

Conference Calls

• 2009-11-04: Phylogenetics, Simulations, OTU
• OTU Notes 1-15-10

Photos

True Positive and True Negative Rates