Moore Notes 7 22 09
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Group Call
- 16S based OTUs from GOS (Josh)
- Quince got data from Rusch
- They only have them for all samples together
- Do they know which reads go into OTUs: could try to de-convolve
- clustering might be better with full data
- Or we could start from scratch
- similarity based: Jess Bryant has some ideas (use MOTHUR=DOTUR+SONS etc)
- CAMERA has separate 16S read files (shotgun?)
- Martin: try RDP pipeline?
- Can do this in MOTHUR
- They have an example of how to do this exact analysis on GOS http://schloss.micro.umass.edu/mothur/Marine_community_analysis
- Tom: interest in a svn repository?
- Srijak: setting up iSEEM server this week
- Will check with Mike Lewis and Marisano
- Just a data/code drop box, not for running code
- same network as genbeo
- how to get software on genbeo?
- Group meeting: Dec. 15-16
- Subcontract funds
- Martin and Katie still waiting
- Steve will give a workshop this weekend: Botany and Mycology meetings
- Will meet with Alexis about raxml methods
- Sam will email by Sunday night
- Steve is going to ESA following week
- Dongying and Sam and Tom are going CIPRES
- Marisano: wants to go to Illumina users group meeting
- UCB, Aug 7
- Getting postdocs together
- Tom: very useful to go back and forth
- Try to do a monthly get together
- Steve would like to come down some time this Fall
- Josh has a cheap airline
- Everybdody update skype this week