Moore Notes 5 21 14
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- Shotmap update
- Big update pushed out last night
- Simplified interface with the workflow
- Local compute server now fully operational
- Patrick and benchmarking ?
- Database-free classification and abundance calculations are now available options
- Almost have a completely database-free version up and running
- Starting to reclassify data. Could use some help. Stacia?
- Stacia will test drive new version and then start reclassification of KEGG and SFams; will organize what’s been done and what settings were used, where it’s located
- Tom work on orf based rarefaction for the L4 analysis
- MetaHIT classifications:
- Patrick and MetaCyc
- Tim’s samples: Tom and Stacia
- Tom will run his samples
- Will then pass MetaHIT results to Stephen and Patrick for follow-up analysis
- Big update pushed out last night
- Other updates?
- Stephen interested in describing the core genome of microbial taxa using metagenomic data for the perspective of scaffolding reads for population-genetic analyses. He notes that this relates to some of Tom’s recent ideas on core/flex genome size, functional diversification, and environmental relationships
- They’ll stay in touch about progress and look for ways to collaborate on this front
- Sarah may have update in near future
- Ladan will have summer internship (Udacity). Starts June 9, until Sept. 15. Not sure if she’ll be able to participate in calls.