Moore Notes 4 15 09
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Group Call
- Simulation stuff
- Need the "drop box" at UCD - temporary solution: Use UO machine
- Jess & Steve paper idea: effects of different components of the pipeline on measures
- make communities and simulate metagenomic reads
- what to assess: trees? more: pd? otus? AMPHORA? other methods?
- how to keep it from spiraling out of control?
- for PLoS Comp Bio review?
- Make a piece of software to do simulations/comparisons (for the community to test their data)
- Bob Edgar's tools
- Give him some simulated data sets
- Try it a few times and see
- Openwetware notes
- Sam's stuff is in 3 places: consolidate. what is the scope?
- Use individual's home pages/lab notebooks that possibly link to other pages
- Steve will put a link to the members page on our members only home page
- These member pages will be our home pages with what we are doing and/or linking to project pages that give this information
- SARs
- Bill Kunin collaboration
- question: new function for SAR vs. linear vs. logistic?
- has logistic been used in the literature? Helene says no.
- James is working on mechanistic approach: maybe logit for distance decay?
- testing
- use Terry Erwin's estimates (large scale from small scale)
- Donying's plans for extending the collection of gene families
- JG: Actinobacteria
- Everyone will send their clade requests to Dongying and JE
- Need AMPHORA run on GOS
- Steve will request from Srijak