Moore Notes 3 19 14
From OpenWetWare
Jump to navigationJump to search
Group Call
- Participants: Katie, Stacia, Tom, Ladan, Sarah, Josh, Guillaume
- Computing resources
- Tom Purchasing
- Dell 920 (120 nodes, 1Tb RAM) $35K
- HTC db server (12Tb solid state) $6K
- Still has access to OSU cluster, but busy
- Pollard lab servers slowly getting fixed
- Tom Purchasing
- Patrick and Josh met with Suwen Zhao (Jacobson lab)
- 4-carbon sugar with unknown function
- Genome context analysis gives pathway
- What is its niche? purpose?
- Look for families in GOS and soil data metagenomes with shotmap
- Josh will look at environmental correlates
- Data analyses for Shotmap paper
- Almost all MetaHIT samples are processed with SFams, a few to do with KEGG, metaCyc done
- Compare across databases
- English Channel is done
- Clustering based on seasonal variation
- Discuss next time
- Almost all MetaHIT samples are processed with SFams, a few to do with KEGG, metaCyc done