Moore Notes 1 29 14
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Group Call
- Participants: Katie, Tom, Patrick, Josh, Guillaume, Dongying, Sarah, Ladan, Stephen
- PICRUSTs: hold off for now
- Updated Jack, who will look into distributions in more detail in their work
- Data for protein family niche modeling
- Tara data will not be released until paper comes out
- Guillaume will re-check CAMERA
- Josh will look for 16S studies where we might be able to shotgun sequence the samples
- Katie will touch base with Samantha Forde
- Tom: hot springs?
- EFI: novel gene families using Sfams
- Sfam sequences not in Pfam, KEGG, etc.
- Stephen & Patrick:
- Mapping Sfams to UniProt
- Intersecting with other annotations
- Ranking based on taxonomic diversity, ecological distribution, other properties
- Redoing Sfam pipeline to identify more distant homologs
- Status of Sfams build 3? Incomplete (sifting only), from June
- Builds 2 and 3 could be useful for identifying additional sequences sifted into build 0/1 families
- Stephen: What about using MetaRef? EggNOG?
- Stephen: Simmap might be helpful (blast results)
- MicrobeDB
- Bugs fixed hopefully
- Need to get new genomes downloaded
- Hiring to replace Tim
