Mesoplasma florum:Codon usage

The Mesoplasma florum codon usage table is here. Also in this table are the probabilities for E. coli codons, and a compromise codon probability calculated by taking the geometric mean of the two genome codon probabilities and renormalizing such that the sum of probabilities of each codon for a specific amino acid is unity. A computer readable version of this compromise codon table is here, suitable for use with the DNA2.0 Gene Designer software available here. Compromise codon table

Amino acid	Codon	Number	Number / 1000	Probability	EC Probability	Compromise Probability
Gly	GGG	848	3.45	0.06	.15	.12
Gly	GGA	5717	23.26	0.43	.11	.26
Gly	GGT	6147	25.01	0.47	.34	.49
Gly	GGC	461	1.88	0.03	.40	.13
Glu	GAG	1543	6.28	0.09	.31	.17
Glu	GAA	16303	66.34	0.91	.69	.83
Asp	GAT	10918	44.43	0.83	.63	.74
Asp	GAC	2203	8.96	0.17	.37	.26
Val	GTG	632	2.57	0.04	.37	.15
Val	GTA	4237	17.24	0.28	.15	.25
Val	GTT	9660	39.31	0.65	.26	.52
Val	GTC	344	1.40	0.02	.22	.08
Ala	GCG	519	2.11	0.04	.36	.15
Ala	GCA	6198	25.22	0.46	.21	.38
Ala	GCT	6297	25.62	0.47	.16	.34
Ala	GCC	522	2.12	0.04	.27	.13
Arg	AGG	194	0.79	0.03	.02	.05
Arg	AGA	5448	22.17	0.80	.04	.33
Ser	AGT	3752	15.27	0.23	.15	.23
Ser	AGC	935	3.80	0.06	.28	.16
Lys	AAG	2110	8.59	0.09	.23	.15
Lys	AAA	21721	88.38	0.91	.77	.85
Asn	AAT	13612	55.39	0.77	.45	.62
Asn	AAC	4161	16.93	0.23	.55	.38
Met	ATG	5660	23.03	1.00	1.00	1.00
Ile	ATA	7748	31.53	0.32	.07	.17
Ile	ATT	14701	59.82	0.60	.51	.62
Ile	ATC	1968	8.01	0.08	.42	.21
Thr	ACG	211	0.86	0.02	.27	.10
Thr	ACA	7243	29.47	0.55	.13	.38
Thr	ACT	5558	22.62	0.42	.17	.38
Thr	ACC	274	1.11	0.02	.44	.14
Trp	TGG	101	0.41	0.04	1.00	1.00
Trp	TGA	2489	10.13	0.96	0.0	0.0
Cys	TGT	1275	5.19	0.85	.45	.68
Cys	TGC	228	0.93	0.15	.55	.32
End	TAG	132	0.54	0.19	.07	.14
End	TAA	551	2.24	0.81	.64	.86
Tyr	TAT	7191	29.26	0.78	.57	.68
Tyr	TAC	1972	8.02	0.22	.43	.32
Leu	TTG	1765	7.18	0.08	.13	.16
Leu	TTA	15736	64.03	0.71	.13	.49
Phe	TTT	10293	41.88	0.81	.57	.70
Phe	TTC	2391	9.73	0.19	.43	.30
Ser	TCG	206	0.84	0.01	.16	.05
Ser	TCA	7413	30.16	0.46	.12	.29
Ser	TCT	3585	14.59	0.22	.15	.22
Ser	TCC	92	0.37	0.01	.15	.05
Arg	CGG	6	0.02	0.00	.10	0.0
Arg	CGA	128	0.52	0.02	.06	.06
Arg	CGT	998	4.06	0.15	.38	.44
Arg	CGC	67	0.27	0.01	.40	.12
Gln	CAG	404	1.64	0.05	.65	.24
Gln	CAA	7058	28.72	0.95	.35	.76
His	CAT	2211	9.00	0.73	.57	.65
His	CAC	836	3.40	0.27	.43	.35
Leu	CTG	182	0.74	0.01	.50	.11
Leu	CTA	1690	6.88	0.08	.04	.08
Leu	CTT	2682	10.91	0.12	.10	.17
Leu	CTC	52	0.21	0.00	.10	0.0
Pro	CCG	203	0.83	0.03	.52	.16
Pro	CCA	3516	14.31	0.57	.19	.44
Pro	CCT	2306	9.38	0.37	.16	.32
Pro	CCC	157	0.64	0.03	.12	.08