Laura Villanueva:Publications

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Molecular Geomicrobiology at the Royal NIOZ

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Publications since NIOZ

For reprints contact me: laura.villanueva[AT]nioz.nl

  • 35. Lipsewers, Y.A., Vasquez-Cardenas, D., Seitaj, D., Schauer, R., Hidalgo Martinez, S., Sinninghe Damsté, J.S., Meysman, F.J.R., Villanueva, L., Boschker, H. Impact of Seasonal Hypoxia on Activity and Community Structure of Chemolithoautotrophic Bacteria in a Coastal Sediment. Appl. Environ. Microbiol. 83: e03517-16 Link. Featured as Article of Significant Interest from the issue by the editors Link
  • 34. Balzano, S., Villanueva, L., de Bar, M., Sinninghe Damsté, J.S., Schouten, S. 2017. Impact of culturing conditions on the abundance and composition of long chain alkyl diols in species of the genus Nannochloropsis. Org. Geochem. 108: 9-17 Link
  • 33. Lipsewers, Y.A., Hopmans, E.C., Meysmann, F.J., Sinninghe Damsté, J. S., and Villanueva, L.. 2016. Abundance and Diversity of Denitrifying and Anammox Bacteria in Seasonally Hypoxic and Sulfidic Sediments of the Saline Lake Grevelingen. Front. Microbiol. 7: 1661 Link
  • 32. Heinzelmann, S.M., Bale, N. J., Villanueva, L., Sinke-Schoen, D., Philippart, K., Sinninghe Damsté, J. S., Schouten, S., van der Meer, M.T.J. 2016. Seasonal changes in the D/H ratio of fatty acids of pelagic microorganisms in the coastal North Sea. Biogeosciences 13: 5527-5539 Link
  • 31. Villanueva, L., Schouten, S. , and Sinninghe Damsté, J. S. 2016. Phylogenomic analysis of lipid biosynthetic genes of Archaea shed light on the 'lipid divide'. Environ Microbiol. doi: 10.1111/1462-2920.13361. Link
  • 30. Lüke, C., Speth, D.R., Kox, M.A., Villanueva, L., and Jetten, M.S. 2016. Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone. PeerJ. 4:e1924. Link
  • 29. Moore, E.K., Hopmans, E.C., Rijpstra, W.I.C., Villanueva, L., and Sinninghe Damsté, J.S. 2016. Elucidation and identification of amino acid containing membrane lipids using liquid chromatography/high-resolution mass spectrometry. Rapid Comm. Mass Spec. 30:739-750 Link
  • 28. Kim, J.-H.*, Villanueva, L.*, Zell, C., and Sinninghe Damsté, J.S. 2016. Biological source and provenance of deep-water derived isoprenoid tetraether lipids along the Portuguese continental margin. *equal contributors Geochim. Cosmochim. Acta 172: 177–204 Link
  • 27. Villanueva, L., Schouten, S., and Sinninghe Damsté, J. S. 2015. Depth-related distribution of a key gene of the tetraether lipid biosynthetic pathway in marine Thaumarchaeota. Environ.Microbiol. 17:3527-3539. Pubmed
  • 26. Moore, E.K.*, Villanueva, L.*, Hopmans, E.C., Rijpstra, W.I.C., Mets, A.,Dedysh, E.,and Sinninghe Damsté, J.S. 2015. Abundant trimethylornithine lipids and specific gene sequences indicate Planctomycete importance at the oxic/anoxic interface in Sphagnum-dominated northern wetlands. *equal contributors Appl. Environ. Microbiol. Pubmed
  • 25. Moore, E.K., Hopmans, E.C., Rijpstra, W.I.C., Sanchez Andrea, I., Villanueva, L., Wienk, H., Schoutsen, F., Stams, A., Sinninghe Damsté, J.S. 2015. Lysine and novel hydroxylysine lipids in soil bacteria: amino acid membrane lipid response to temperature and pH in Pseudopedobacter saltans. Front. Microbiol. http://dx.doi.org/10.3389/fmicb.2015.00637 Link
  • 24. Heinzelmann, S., Chivall, D., M'Boule, D., Sinke-Schoen, D., Villanueva, L., Sinninghe Damsté, J.S., Schouten, S., van der Meer, M. 2015. Comparison of the effect of salinity on the D/H ratio of fatty acids of heterotrophic and photoautotrophic microorganisms. FEMS Microbiol. Letters Pubmed
  • 23. Heinzelmann, S., Villanueva, L., Sinke-Schoen, D., Sinninghe Damsté, J. S., Schouten, S., van der Meer, M.T.J. Impact of metabolism and growth phase on the hydrogen isotopic composition of microbial fatty acids. Front. Microbiol. Link
  • 22. Schouten, S., Villanueva, L., Hopmans, E.C., van der Meer, M., and Sinninghe Damsté, JS. 2014. Are Marine Group II Euryarchaeota significant contributors to tetraether lipids in the ocean?. Proc. Natl. Acad. Sci. USA 41: E4285-E4285. Pubmed
  • 21. Lipsewers, Y.A., Bale, N.J., Hopmans, E.C., Schouten, S., Sinninghe Damsté, J.S., and Villanueva, L. 2014. Seasonality and depth distribution of the abundance and activity of ammonia oxidizing microorganisms in marine coastal sediments (North Sea). Front Microbiol. Sep 5;5:472 Pubmed
  • 20. Villanueva, L., Schouten, S., and Sinninghe Damsté, JS. 2014. A Re-evaluation of the Archaeal Membrane Lipid Biosynthetic Pathway. Nat. Rev. Microbiol. 12:438–448. Pubmed
  • 19. Villanueva, L., Speth, D.R., van Alen, T., Hoischen, A., and Jetten, M.S.M. 2014. Shotgun metagenomic data reveals significant abundance but low diversity of “Candidatus Scalindua” marine anammox bacteria in the Arabian Sea oxygen minimum zone. Front. Microbiol. 5:31. Pubmed
  • 18. Villanueva, L., Besseling M, Rampen S., Rodrigo-Gamiz M., and Sinninghe Damste JS. 2014. Potential biological sources of long chain alkyl diols in a lacustrine system. Org. Geochem. 68:27-30. Link
  • 17. Villanueva, L., Rijpstra, W.I.C., Schouten, S., and Sinninghe Damsté, J.S. 2014. Genetic biomarkers of the sterol-biosynthetic pathway in microalgae. Environ. Microbiol. Reports 6:35-44. Pubmed
  • 16. Villanueva, L., N. Bale, E. C. Hopmans, S. Schouten, and J. S. Sinninghe Damsté. 2014. Diversity and distribution of a key sulpholipid biosynthetic gene in marine microbial assemblages. Environ.Microbiol. 16:774-787. Pubmed
  • 15. Bale NJ*, Villanueva L*, Fan H, Stal LJ, Hopmans EC, Schouten S, Sinninghe Damsté JS. 2014. Occurrence and activity of anammox bacteria in surface sediments of the southern North Sea. FEMS Microbiol Ecol. 89:99-110. *equal contributors Pubmed
  • 14. Bale, N.*, Villanueva, L.*, Hopmans, E.C., Schouten, S., and Sinninghe Damste, J.S. 2013. Different seasonality of pelagic and benthic Thaumarchaeota in the North Sea. Biogeosciences 10:7195–7206. *equal contributors Link
  • 13. Buckles, L.*, Villanueva, L.*, Weijers, J., Verschuren, D., and Sinninghe Damste, J.S. 2013. Linking isoprenoidal GDGT membrane-lipid distributions with gene abundances of ammonia-oxidising Thaumarchaeota and uncultured crenarchaeotal groups in the water column of a tropical lake (Lake Challa, East Africa). Environ. Microbiol. 15:2445-2462. *equal contributors Pubmed
  • 12. Moore, E., Hopmans, E.C., Rijpstra, W.I.C., Villanueva, L., Dedysh, E., Kulichevskaya, I., Wienk, H., Schoutsen, F., and Sinninghe Damsté. J.S. 2013. Novel mono-, di-, and trimethylornithine membrane lipids in northern wetland planctomycetes. Appl. Environ. Microbiol. 79:6874-6884. Pubmed
  • 11. Schouten, S., Pitcher, A., Hopmans, E.C., Villanueva, L., van Bleijswijk, J., and Sinninghe Damsté, J.S. 2012. Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids in the Arabian Sea oxygen minimum zone: I. Selective preservation and degradation in the water column and its consequences for the TEX86. Geochim. Cosmochim. Acta 98: 228–243. Link
  • 10. Pitcher, A.*, Villanueva, L.*, Hopmans, E.C., Schouten, S., Reichart, G-J., and Sinninghe Damsté, J.S. 2011. Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone. ISME J. 5:1896–1904. *equal contributors Pubmed

Publications before NIOZ

  • 9. Lin, A., Jimenez, J., Derr J., Vera P., Manapat M. L., Esvelt, K., Villanueva L., Liu D. R., Chen I. A. 2011. Inhibition of bacterial conjugation by phage M13 and its protein g3p: quantitative analysis and mechanism. Plos One 6:5 (e19991). Link
  • 8. Villanueva L., J. del Campo, and R. Guerrero. 2010. Diversity and physiology of polyhydroxyalkanoate-producing and -degrading strains in microbial mats. FEMS Microbiol. Ecol. 74:42–54. Pubmed
  • 7. Villanueva L., J. del Campo, R. Guerrero, and R. Geyer. 2010. Intact Phospholipid and Quinone Biomarkers to Assess Microbial Diversity and Redox State in Microbial Mats. Microb. Ecol. 60:226–238. Pubmed
  • 6. Villanueva L., S. A. Haveman, Z. M. Summers, and D. R. Lovley. 2008. Quantification of Desulfovibrio vulgaris dissimilatory sulfite reductase gene expression during electron Donor and Acceptor-Limited Growth. Appl. Environ. Microbiol. 74:5850–5853. Pubmed
  • 5. Haveman S. A., R. DiDonato, L. Villanueva, E. S. Shelobolina, B. L. Postier, B. Xu, A. Liu, and D. R. Lovley. 2008. Genome-wide Gene Expression Patterns and Growth Requirements Suggest that Pelobacter carbinolicus Reduces Fe(III) Indirectly via Sulfide Production. Appl. Environ. Microbiol. 74:4277–4284. Pubmed
  • 4. Villanueva L., A. Navarrete, J. Urmeneta. R. Geyer, R. Guerrero, and D. C. White. 2007. Monitoring Diel Variations of Physiological Status and Bacterial Diversity in an Estuarine Microbial Mat: An Integrated Biomarker Analysis. Microb. Ecol. 54:523–531. Pubmed
  • 3. Villanueva L., A. Navarrete, J. Urmeneta, R. Guerrero, and D. C. White. 2007. Analysis of the Spatial and Diurnal Diversity in an Estuarine Microbial Mat. Arch. Microbiol. 188:137–146.[ http://www.ncbi.nlm.nih.gov/pubmed/17361455 Pubmed]
  • 2. Villanueva L., A. Navarrete, J. Urmeneta, D. C. White, and R. Guerrero. 2004. Physiological status and microbial diversity assessment of microbial mats: the signature lipid biomarker approach. Ophelia 58:165–173. Link
  • 1. Villanueva L., A. Navarrete, J. Urmeneta, D. C. White, and R. Guerrero. 2004. Combined phospholipid biomarker-16S rRNA gene denaturing gradient gel electrophoresis analysis of bacterial diversity and physiological status in an intertidal microbial mat. Appl. Environ. Microbiol. 70:6920–6926. Pubmed