IC Bioinfs/Project1

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Project Overview

Summary of D. Huntley's sheet

Project Timeline

  • For now a meeting plan, will include a flow-chart of our project.

LOGBOOK

  • Filling this in is a must!

Brainstorming

Here we shall put in our ideas- things that may need improving on.

Resources

Section summarizing reading/sources of information for the project.


Existing Resources

Parts Registry

Mainly the summary from the googledoc on DNA assembly methods and other stuff from the registry. Key to understand the context!

Other existing programs

There's stuff here now!


SQL

BioSQL

Info about the BioSQL project, and its schema.

Toy Database

The SQL database that will be used during the project.

Web Server

Tomcat: Servlets and JSPs

Tomcat didn't quite work... so trying to implement servlets in FLEX directly:

GUI

Adobe Flex

A program to develop Rich Internet Applications.

DAS

DAS

Contains a summary of notes. It will be useful to include information about other DAS servers and how they work (eg Ensembl) as they may be useful in helping us understand what to do and how.

DAZZLE

Introduction to DAS and how to setup a DAS server. Here are links to do this in DAZZLE or PROSERVER

DAS reference Server

Google App Engine

OK, so in order to use this app engine we are going to have to create the database here using the datastore.

Other

Bits of code

Any useful, if somewhat basic, code we write.


BLAST IN JAVA

Links

Do contribute to these sections by adding more sub-pages.