Harvard:Biophysics 101/2007/Project/Inputs/Outputs

Xiaodi 1st code

• input: fasfa file
• output: outputs a class of allelic variants

Chris

• input: dict class (some criteria should go into the class)
• output: dict class

Xiaodi 2nd code: local searches

• input: fasfa file
• output: mutations (format undetermined), position, and nature in the mutation, and protein sequence

Mike

• input: protein sequence, and snp location (position is important)
• output: (I wasn't able to record this)

Kay

• input: Xiaodi's output
• output: rs#

Resmi and Cynthia

• input: list of rs#
• output: raw list of mesh terms, parsed list of mesh terms (slash?) list of strings

• other outputs: print article titles, string is "mesh_?"

Zach

• input: list of strings that are mesh terms, specifically major mesh terms, the most relevant terms, an object that encapulates multiple strings
• output: CDC ID, of the most prevalent hit

Tiffany's code

• input: string disease name
• output: list of URLs, list of clinical trials

Deniz

• input: Zach's input, Tiff's input
• output: output any feed that the class wants (clinical trials, news, resources)