Gist
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This presentation from the BioMIBLab Summer 2006 Workshop is an analysis bioinformatics tool.
Synopsis
- Gist is a set of command line programs written in C
- Primary programs
- SVM and KPCA
- Auxiliary programs
- Ranking and feature selection
- Web interface for the SVM component
Features
- Normalizations
- Column (sample) mean center
- Column (sample) z-score
- Classifiers
- SVM
- Data Representation
- Text files
- HTML output
- Ranking Methods
- Fisher criterion
- T-test
- SAM
- Mann-Whitney
- Welch t-test
