Dandekar & Chandler:Useful websites
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Pseudomonas-specific websites
- - Best starting place for gene lookup
- - Automatically set to PAO1 as reference genome
- - Search by gene name, locus tag, or by coordinates
- - Easily see gene neighborhood and get sequences, including 500 bp upstream and downstream
- - Link out to Pseudomonas Ortholog Database
- - Very excellent link out to JBrowse, which will show all in once place:
- Functional Domain Predictions
- Gene and Protein Annotations
- Genomic Island Predictions
- Regulatory Regions
- - Very excellent link out to PseudoCyc Metabolic Pathways
Prokaryotic Genome Analysis Tool (PGAT) - UW Genomics
- - Repository for UW-sequenced projects (including some EPIC strains)
- - Must login through UW to access in progress and lab-specific sequencing
