Cfrench:hemlist1

Genera of bacteria and archaea with hemerythrin-like genes

Based on searches performed during November 2006.

Genus	family	order	class/phylum	number of hemerythrins
Acidobacteria sp.	Acidobacteriaeae	Acidobacteriales	Acidobacteria	4
Acidovorax	Comamonadaceae	Burkholderiales	Betaproteobacteria	1,3
Aeromonas	Aeromonadaceae	Aeromonadales	Gammaproteobacteria	2
Alcanivorax	Alcanivoraceae	Oceanospirillales	Gammaproteobacteria	1
Alkalilimnicola	Ectothiorhodospiraceae	Chromatiales	Gammaproteobacteria	2
Anaeromyxobacter	Myxococcaceae	Myxococcales	Deltaproteobacteria	8
Aquifex	Aquificaceae	Aquificales	Aquificae	1
Azotobacter	Pseudomonadaceae	Pseudomonadales	Gammaproteobacteria	1
Bdellovibrio	Bdellovibrionaceae	Bdellovibrionales	Deltaproteobacteria	1
Bordetella	Alcaligenaceae	Burkholderiales	Betaproteobacteria	1
Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	23 strains 1 each, 1 strain has 3
Campylobacter	Campylobacteraceae	Campylobacterales	Epsilonproteobacteria	7, 2, 6, 3, 5, 5, 5, 5, 3, 2, 2, 5
Caldocellulosiruptor	Syntrophomonadaceae	Clostridiales	Clostridia, Firmicutes	1
Clostridium	Clostridicaeae	Clostridiales	Clostridia, Firmicutes	1, 6, 5, 1, 2
Colwellia	Colwelliaceae	Alteromonadales	Gammaproteobacteria	7
Comamonas	Comamonadaceae	Burkholderiales	Betaproteobacteria	4
Dechloromonas	Rhodocyclaceae	Rhodocyclales	Betaproteobacteria	10
Desulfitobacterium	Peptococcaceae	Clostridiales	Clostridia, Firmicutes	2, 2
Desulfotalea	Desulfobulbaceae	Desulfobacterales	Deltaproteobacteria	3
Desulfovibrio	Desulfovibrionaceae	Desulfovibrionales	Deltaproteobacteria	3, 4, 4
Desulfuromonas	Desulfuromonadaceae	Desulfuromonadales	Deltaproteobacteria	10
Leuwenhoekiella	Flavobacteriaceae	Flavobacteriales	Flavobacteria, Bacteroidetes	1
Geobacter	Geobacteraceae	Desulfuromonadales	Deltaproteobacteria	2, 2, 2, 5
Haloarcula	Halobacteriaceae	Halobacteriales	Halobacteria, Euryarchaeota	1
Halorhodospira	Ectothiorhodospiraceae	Chromatiales	Gammaproteobacteria	1
Helicobacter	Helicobacteraceae	Campylobacterales	Epsilonproteobacteria	2
Hydrogenobacter	Aquificaceae	Aquificales	Aquificae	1
Idiomarina	Idiomarinaceae	Alteromonadales	Gammaproteobacteria	1, 1
Janthinobacterium	Oxalobacteraceae	Burkholderiales	Betaproteobacteria	1 or 2
Kuenenia		Planctomycetales	Planctomycetes	2
Magnetococcus			Proteobacteria	14 to 19
Magnetospirillum	Rhodospirillaceae	Rhodospirillales	Alphaproteobacteria	approx 29, 29
Mariprofundus			Proteobacteria	1
Mesorhizobium	Phyllobacteriaceae	Rhizobiales	Alphaproteobacteria	1
Methanocaldococcus	Methanocaldococcaceae	Methanococcales	Methanococci, Euryarchaeota	1
Methanospirillum	Methanospirillaceae	Methanomicrobiales	Methanomicrobia, Euryarchaeota	2
Methylococcus	Methylococcaceae	Methylococcales	Gammaproteobacteria	1
MLMS1			Deltaprotebacteria	5?
Oceanospirillum		Oceanospirillales	Gammaproteobacteria	3
Pelobacter	Pelobacteraceae	Desulfuromonadales	Deltaproteobacteria	3, 1
Polaromonas	Comamonadaceae	Burkholderiales	Betaproteobacteria	3
Pseudomonas	Pseudomonadaceae	Pseudomonadales	Gammaproteobacteria	8 strains, 1 each
Ralstonia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	2, 2, 1
Reinekea			Gammaproteobacteria	2
Rhodoferax	Comamonadaceae	Burkholderiales	Betaproteobacteria	2,2
Rhodopseudomonas	Bradyrhizobiaceae	Rhizobiales	Alphaproteobacteria	1, 1, 1
Rhodospirillum	Rhodospirillaceae	Rhodospirillales	Alphaproteobacteria	6
Shewanella	Shewanellaceae	Alteromonadales	Gammaproteobacteria	11 strains, 1 each
Solibacter	Solibacteraceae	Solibacterales	Solibacteres, Acidobacteria	3
Symbiobacterium			Actinobacteria	1
Syntrophomonas	Syntrophomonadaceae	Clostridiales	Clostridia, Firmicutes	1
Thermoanaerobacter	Thermoanaerobacteriaceae	Thermoanaerobacteriales	Clostridia, Firmicutes	1
Thermosynechococcus		Chroococcales	Cyanobacteria	2
Thiomicrospira	Helicobacteraceae	Campylobacterales	Epsilonproteobacteria	1
Verminephrobacter	Comamonadaceae	Burkholderiales	Betaproteobacteria	1
Vibrio	Vibrionaceae	Vibrionales	Gammaproteobacteria	8 strains, 1 each
Wolinella	Helicobacteraceae	Campylobacterales	Epsilonproteobacteria	1
Xanthomonas	Xanthomonadaceae	Xanthomonadales	Gammaproteobacteria	1, 1, 1, 1

List ordered taxonomically

Genus	family	order	class/phylum	number of hemerythrins
Acidobacteria sp.	Acidobacteriaeae	Acidobacteriales	Acidobacteria	4
Solibacter	Solibacteraceae	Solibacterales	Solibacteres, Acidobacteria	3
Aquifex	Aquificaceae	Aquificales	Aquificae	1
Hydrogenobacter	Aquificaceae	Aquificales	Aquificae	1
Rhodopseudomonas	Bradyrhizobiaceae	Rhizobiales	Alphaproteobacteria	1, 1, 1
Mesorhizobium	Phyllobacteriaceae	Rhizobiales	Alphaproteobacteria	1
Magnetospirillum	Rhodospirillaceae	Rhodospirillales	Alphaproteobacteria	approx 29, 29
Rhodospirillum	Rhodospirillaceae	Rhodospirillales	Alphaproteobacteria	6
Magnetococcus			Alphaproteobacteria	14 to 19
Bordetella	Alcaligenaceae	Burkholderiales	Betaproteobacteria	1
Burkholderia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	23 strains 1 each, 1 strain has 3
Ralstonia	Burkholderiaceae	Burkholderiales	Betaproteobacteria	2, 2, 1
Acidovorax	Comamonadaceae	Burkholderiales	Betaproteobacteria	1,3
Comamonas	Comamonadaceae	Burkholderiales	Betaproteobacteria	4
Polaromonas	Comamonadaceae	Burkholderiales	Betaproteobacteria	3
Rhodoferax	Comamonadaceae	Burkholderiales	Betaproteobacteria	2,2
Verminephrobacter	Comamonadaceae	Burkholderiales	Betaproteobacteria	1
Janthinobacterium	Oxalobacteraceae	Burkholderiales	Betaproteobacteria	1 or 2
Dechloromonas	Rhodocyclaceae	Rhodocyclales	Betaproteobacteria	10
Aeromonas	Aeromonadaceae	Aeromonadales	Gammaproteobacteria	2
Colwellia	Colwelliaceae	Alteromonadales	Gammaproteobacteria	7
Idiomarina	Idiomarinaceae	Alteromonadales	Gammaproteobacteria	1, 1
Shewanella	Shewanellaceae	Alteromonadales	Gammaproteobacteria	11 strains, 1 each
Alkalilimnicola	Ectothiorhodospiraceae	Chromatiales	Gammaproteobacteria	2
Halorhodospira	Ectothiorhodospiraceae	Chromatiales	Gammaproteobacteria	1
Methylococcus	Methylococcaceae	Methylococcales	Gammaproteobacteria	1
Oceanospirillum		Oceanospirillales	Gammaproteobacteria	3
Alcanivorax	Alcanivoraceae	Oceanospirillales	Gammaproteobacteria	1
Azotobacter	Pseudomonadaceae	Pseudomonadales	Gammaproteobacteria	1
Pseudomonas	Pseudomonadaceae	Pseudomonadales	Gammaproteobacteria	8 strains, 1 each
Vibrio	Vibrionaceae	Vibrionales	Gammaproteobacteria	8 strains, 1 each
Xanthomonas	Xanthomonadaceae	Xanthomonadales	Gammaproteobacteria	1, 1, 1, 1
Reinekea			Gammaproteobacteria	2
Bdellovibrio	Bdellovibrionaceae	Bdellovibrionales	Deltaproteobacteria	1
Desulfotalea	Desulfobulbaceae	Desulfobacterales	Deltaproteobacteria	3
Desulfovibrio	Desulfovibrionaceae	Desulfovibrionales	Deltaproteobacteria	3, 4, 4
Desulfuromonas	Desulfuromonadaceae	Desulfuromonadales	Deltaproteobacteria	10
Geobacter	Geobacteraceae	Desulfuromonadales	Deltaproteobacteria	2, 2, 2, 5
Pelobacter	Pelobacteraceae	Desulfuromonadales	Deltaproteobacteria	3, 1
Anaeromyxobacter	Myxococcaceae	Myxococcales	Deltaproteobacteria	8
MLMS1			Deltaprotebacteria	5?
Campylobacter	Campylobacteraceae	Campylobacterales	Epsilonproteobacteria	7, 2, 6, 3, 5, 5, 5, 5, 3, 2, 2, 5
Helicobacter	Helicobacteraceae	Campylobacterales	Epsilonproteobacteria	2
Thiomicrospira	Helicobacteraceae	Campylobacterales	Epsilonproteobacteria	1
Wolinella	Helicobacteraceae	Campylobacterales	Epsilonproteobacteria	1
Mariprofundus			Proteobacteria	1
Clostridium	Clostridicaeae	Clostridiales	Clostridia, Firmicutes	1, 6, 5, 1, 2
Desulfitobacterium	Peptococcaceae	Clostridiales	Clostridia, Firmicutes	2, 2
Caldocellulosiruptor	Syntrophomonadaceae	Clostridiales	Clostridia, Firmicutes	1
Syntrophomonas	Syntrophomonadaceae	Clostridiales	Clostridia, Firmicutes	1
Thermoanaerobacter	Thermoanaerobacteriaceae	Thermoanaerobacteriales	Clostridia, Firmicutes	1
Leuwenhoekiella	Flavobacteriaceae	Flavobacteriales	Flavobacteria, Bacteroidetes	1
Kuenenia		Planctomycetales	Planctomycetes	2
Symbiobacterium			Actinobacteria	1
Thermosynechococcus		Chroococcales	Cyanobacteria	2
Haloarcula	Halobacteriaceae	Halobacteriales	Halobacteria, Euryarchaeota	1
Methanocaldococcus	Methanocaldococcaceae	Methanococcales	Methanococci, Euryarchaeota	1
Methanospirillum	Methanospirillaceae	Methanomicrobiales	Methanomicrobia, Euryarchaeota	2

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