Analysis of short chain bacteriohemerythrins
Alpha Proteobacteria
| Strain |
Locus Tag |
Length |
Code |
Group
|
| Magnetococcus sp. MC-1 |
Mmc1_1179 |
124 |
Magco124 |
bp-1?
|
|
Mmc1_2231 |
123 |
Magco134 |
-
|
|
Mmc1_3235 |
174 |
Magco174 |
-
|
|
Mmc1_3358 |
160 |
Magco160 |
-
|
| Magnetospirillum gryphiswaldense MSR1 |
mgI449 |
159 |
Maggr159 |
ap-1a
|
|
mgI478, ORF13 |
150 or 149 |
Maggr150 |
ap-1b
|
| Magnetospirillum magneticum AMB-1 |
amb0226 |
135 |
Magam135 |
ap-1d
|
|
amb0520 |
122 |
Magam122 |
ap-7
|
|
amb0569 |
129 |
Magam129 |
ap-1f
|
|
amb0737 |
146 |
Magam146 |
ap-6
|
|
amb0935 |
157 |
Magam157 |
ap-1b
|
|
amb0985 |
171 |
Magam171a |
ap-1a
|
|
amb1378 |
169 |
Magam169 |
ap-4
|
|
amb1415 |
132 |
Magam132 |
ap-1e
|
|
amb1549 |
134 |
Magam134 |
ap-1g
|
|
amb2239 |
142 |
Magam142 |
ap-5a
|
|
amb2249 |
143 |
Magam143 |
ap-8
|
|
amb2654 |
140 |
Magam140a |
ap-5b
|
|
amb2739 |
179 |
Magam179 |
ap-3b
|
|
amb2800 |
171 |
Magam171b |
ap-2b
|
|
amb3091 |
147 |
Magam147 |
ap-3a
|
|
amb3835 |
156 |
Magam156 |
ap-1c
|
|
amb3966 |
148 |
Magam148 |
ap-4a
|
|
amb4136 |
140 |
Magam140b |
ap-2e?
|
|
amb4171 |
138 |
Magam138 |
ap-2c
|
|
amb4265 |
144 |
Magam144 |
ap-2a
|
|
amb4296 |
136 |
Magam136 |
ap-4
|
|
amb4401 |
161 |
Magam161 |
ap-2d
|
| Magnetospirillum magnetotacticum MS-1 |
Magn03005600 |
134 |
Magms134a |
ap-1g
|
|
Magn03007081 |
150 |
Magms150 |
ap-3b
|
|
Magn03007233 |
140 |
Magms140 |
ap-5b
|
|
Magn03007342 |
114 |
Magms114 |
ap-1c
|
|
Magn03007440 |
135 |
Magms135a |
ap-5a
|
|
Magn03007701 |
159 |
Magms159 |
ap-1a
|
|
Magn03007822 |
120 |
Magms120a |
ap-8
|
|
Magn03008338 |
127 |
Magms127 |
-
|
|
Magn03008342 |
132 |
Magms132 |
ap-1e
|
|
Magn03008958 |
139 |
Magms139 |
ap-3a
|
|
Magn03008494 |
120 |
Magms120b |
ap-7
|
|
Magn03008990 |
134 |
Magms134b |
ap-6
|
|
Magn03009649 |
122 |
Magms122 |
-
|
|
Magn03009746 |
144 |
Magms144a |
-
|
|
Magn03009911 |
136 |
Magms136 |
ap-2c
|
|
Magn03010109 |
131 |
Magms131 |
-
|
|
Magn03010161 |
144 |
Magms144b |
ap-2a
|
|
Magn03010652 |
146 |
Magms146 |
ap-4a
|
|
Magn03010772 |
158 |
Magms158 |
-
|
|
Magn03010975 |
135 |
Magms135b |
ap-1d
|
|
Magn03011053 |
129 |
Magms129 |
ap-1f
|
| Mesorhizobium sp. BNC1 |
Meso_4300 |
134 |
Mesbn134 |
-
|
| Rhodospirillum rubrum ATCC 11170 |
Rru_A1655 |
148 |
Rhoru148 |
ap-1
|
|
Rru_A3211 |
176 |
Rhoru176 |
ap-2
|
|
Rru_A2082 |
209 |
Rhoru209 |
ap-3
|
Beta Proteobacteria
| Strain |
Locus Tag |
Length |
Code |
Group
|
| Acidovorax avenae AAC00-1 |
AAveDRAFT_4356 |
171 |
Aciav171 |
bp-1b
|
| Acidovorax sp. JS42 |
AjsDRAFT_4228 |
168 |
Acijs168 |
bp-1b
|
|
AjsDRAFT_3609 |
180 |
Acijs180 |
X
|
| Bordetella avium 197N |
BAV0601 |
148 |
Borav148 |
bp-2a
|
| Burkholderia mallei ATCC23344 |
BMA0605 |
149 |
Burma149 |
bp-1a
|
| Burkholderia mallei GB8 horse 4 |
BmalG_01002260 |
149 |
Burma149 |
bp-1a
|
| Burkholderia mallei FMH |
BmalF_02000813 |
149 |
Burma149 |
bp-1a
|
| Burkholderia mallei JHU |
BmalJ_02001239 |
149 |
Burma149 |
bp-1a
|
| Burkholderia mallei SAVP1 |
BmalS_02000673 |
149 |
Burma149 |
bp-1a
|
| Burkholderia mallei 10229 |
Bmal1_02002528 |
149 |
Burma149 |
bp-1a
|
| Burkholderia mallei 2002721280 |
Bmal2_03002101 |
149 |
Burma149 |
bp-1a
|
| Burkholderia mallei 10399 |
Bmal10_03003258 |
149 |
Burma149 |
bp-1a
|
| Burkholderia mallei NCTC 10247 |
BmalN_01003861 |
145 |
Burmp145 |
bp-1a
|
| Burkholderia phymatum STM815 |
BphyDRAFT_6431 |
147 |
Burph147 |
bp-2b
|
| Burkholderia pseudomallei 668 |
Bpse6_01003104 |
145 |
Burmp145 |
bp-1a
|
| Burkholderia pseudomallei 1106b |
Bpse110_02002465 |
145 |
Burmp145 |
bp-1a
|
| Burkholderia pseudomallei 1655 |
Bpse1_03002047 |
145 |
Burmp145 |
bp-1a
|
| Burkholderia pseudomallei Pasteur |
BpseP_03004124 |
145 |
Burmp145 |
bp-1a
|
| Burkholderia pseudomallei 406e |
Bpse4_03003105 |
145 |
Burmp145 |
bp-1a
|
| Burkholderia pseudomallei 1106a |
Bpse11_03001529 |
145 |
Burmp145 |
bp-1a
|
| Burkholderia pseudomallei 1710b |
BURPS1710b_2831 |
186 (141) |
Burps141 |
bp-1a
|
| Burkholderia pseudomallei K96243 |
BPSL2377 |
141 |
Burps141 |
bp-1a
|
| Burkholderia pseudomallei 1710a |
Bpse17_02004690 |
141 |
Burps141 |
bp-1a
|
| Burkholderia pseudomallei S13 |
BpseS_03004721 |
141 |
Burps141 |
bp-1a
|
| Burkholderia thailandensis E264 |
BTH_I1789 |
141 |
Burth141 |
bp-1a
|
| Burkholderia vietnamiensis G4 |
Bcep1808DRAFT_0731 |
158 |
Burvi158 |
bp-2a
|
| Burkholderia xenovorans LB400 |
Bxe_C0962 |
159 |
Burxe159 |
bp-2b
|
|
Bxe_C0584 |
165 |
Burxe165 |
bp-2b
|
|
Bxe_A3521 |
166 |
Burxe166 |
bp-2a
|
| Comamonas testosteroni KF-1 |
CtesDRAFT_1489 |
179(159) |
Comte159 |
bp-3
|
|
CtesDRAFT_1954 |
211 |
Comte211 |
gp-1
|
|
CtesDRAFT_3164 |
165 |
Comte165a |
bp-2a
|
|
CtesDRAFT_4167 |
165 |
Comte165b |
bp-1b
|
| Delftia acidovorans SPH-1 |
DaciDRAFT_3784 |
166 |
Delac166 |
bp-1b
|
|
DaciDRAFT_5656 |
213 |
Delac213 |
gp-1
|
| Janthinobacterium lividum BR |
(none) |
132 |
Janli132 |
bp-?
|
| Janthinobacterium sp. J3 |
ORF33 |
149 |
Jansp149 |
bp-2b
|
| Polaromonas naphthalenivorans CJ2 |
PnapDRAFT_2309 |
152 |
Polna152 |
bp-2a
|
|
PnapDRAFT_2635 |
168 |
Polna168 |
bp-1b
|
|
PnapDRAFT_4966 |
155 |
Polna155 |
bp-3
|
| Ralstonia eutropha H16 |
H16_A2797 |
146 |
RaleuH146 |
bp-1a
|
| Ralstonia eutropha JMP134 |
Reut_A0820 |
157 |
RaleuJ157 |
bp-1a
|
| Ralstonia metallidurans CH34 |
Rmet_2637 |
160 |
Ralme160 |
bp-1a
|
| Ralstonia solanacearum GMI1000 |
RSc0777 |
137 |
RalsoG137 |
bp-1a
|
| Ralstonia solanacearum UW551 |
RRSL_01522 |
137 |
RalsoU137 |
bp-1a
|
| Verminephrobacter eiseniae EF01-2 |
VeisDRAFT_1888 |
168 |
Verei168 |
bp-2a?
|
| Dechloromonas aromatica RCB |
Daro_1333 |
161 |
Decar161 |
bp-?
|
|
Daro_1406 |
134 |
Decar134 |
X
|
|
Daro_1420 |
125 |
Decar125 |
bp-?
|
|
Daro_1617 |
160 |
Decar160 |
gp-1
|
|
Daro_1660 |
128 |
Decar128 |
X
|
|
Daro_2268 |
108? |
Decar108 |
X
|
|
Daro_2762 |
146 |
Decar146 |
bp-2b
|
|
Daro_3696 |
142 |
Decar142 |
X
|
Gamma Proteobacteria
| Strain |
Locus Tag |
Length |
Code |
Group
|
| Alcanivorax borkumensis SK2 |
ABO_0064 |
154 |
Alcbo154 |
gp-1
|
| Alkalilimnicola ehrlichei MLHE-1 |
Mlg_0407 |
161 |
Alkeh161 |
gp-1
|
| Azotobacter vinelandii AvOP |
AvinDRAFT_4714 |
134 |
Azovi134 |
bp-?
|
| Colwellia psychrerythraea 34H |
CPS_1745 |
131 |
Colps131 |
gp-2?
|
|
CPS_4221 |
188 |
Colps188 |
gp-2
|
|
CPS_4236 |
192 |
Colps192 |
gp-2
|
| marine gamma proteobacterium HTCC2207 |
GB2207_10903 |
174 |
Unkga174 |
gp-3
|
| Methylococcus capsulatus Bath |
MCA0715 |
131 |
Metca131 |
-
|
| Oceanospirillum sp. MED92 |
MED92_09166 |
121 |
Oceme121 |
-
|
|
MED92_10439 |
129 |
Oceme129 |
-
|
|
MED92_11109 |
135 |
Oceme135 |
gp-3
|
| Pseudomonas aeruginosa PAO1 |
PA1673 |
153 |
Pseae153 |
gp-1
|
| Pseudomonas aeruginosa C3719 |
PaerC_01000653 |
153 |
Pseae153 |
gp-1
|
| Pseudomonas aeruginosa 2192 |
Paer2_01000661 |
153 |
Pseae153 |
gp-1
|
| Pseudomonas aeruginosa PACS2 |
PaerPA_01002136 |
153 |
Pseae153 |
gp-1
|
| Pseudomonas aeruginosa UCBPP-PA14 |
PA14_42860 |
153 |
Pseae153 |
gp-1
|
| Pseudomonas aeruginosa PA7 |
PaerP_01003615 |
153 |
Pseae153 |
gp-1
|
| Pseudomonas resinovorans plasmid |
ORF33 |
146 or 165 |
Psere146 |
bp-2b
|
| Reinekea sp. MED297 |
MED297_01480 |
150 |
Reime150 |
gp-1
|
|
MED297_01485 |
151 |
Reime151 |
gp-1
|
| Shewanella woodyi ATCC 51908 |
SwooDRAFT_2326 |
159 |
Shewo159 |
-
|
| Xanthomonas axonopodis 306 |
XAC2483 |
153 |
Xanax153 |
gp-1
|
| Xanthomonas campestris 8004 |
XC_1765 |
153 |
XancaX153 |
gp-1
|
| Xanthomonas campestris 85-10 |
XCV2661 |
153 |
XancaY153 |
gp-1
|
| Xanthomonas campestris ATCC 33913 |
XCC2351 |
153 |
XancaA153 |
gp-1
|
Delta Proteobacteria
| Strain |
Locus Tag |
Length |
Code |
Group
|
| Strain |
Locus Tag |
Length |
Code |
Group
|
| Anaeromyxobacter dehalogenans 2CP-C |
Adeh_0092 |
146 |
Anade146 |
dp-2b
|
|
Adeh_0219 |
138 |
Anade138 |
dp-2b
|
|
Adeh_0383 |
147 |
Anade147 |
gp-3?
|
|
Adeh_0492 |
144 |
Anade144a |
-
|
|
Adeh_0575 |
144 |
Anade144b |
dp-2b?
|
|
Adeh_3016 |
133 |
Anade133a |
dp-2b
|
|
Adeh_3017 |
133 |
Anade133b |
dp-2b
|
|
Adeh_4100 |
133 |
Anade133c |
dp-2b
|
| Bdellovibrio bacteriovorus HD100 |
Bd3532 |
136 |
Bdeba136 |
-
|
| Desulfotalea psychrophila LSv54 |
DP1787 |
156 |
Desps156 |
-
|
| Desulfovibrio desulfuricans G20 |
Dde_0253 |
150 |
Desde150 |
dp-4
|
| Desulfovibrio vulgaris DP4 |
DvulDRAFT_0258 |
137 |
DesvuD137 |
dp-4
|
| Desulfovibrio vulgaris Hildenborough |
DVU3049 |
137 |
DesvuH137 |
dp-4
|
| Desulfuromonas acetoxidans DSM 684 |
Dace_1122 |
142 |
Desac142 |
dp-4?
|
|
Dace_1123 |
199 |
Desac199 |
dp-3?
|
|
Dace_1813 |
133 |
Desac133 |
dp-3
|
|
Dace_1814 |
132 |
Desac132b |
dp-3
|
|
Dace_2627 |
132 |
Desac132a |
dp-3
|
| Geobacter metallireducens GS-15 |
Gmet_0834 |
155 |
Geome155 |
dp-2a
|
|
Gmet_3121 |
135 |
Geome135 |
dp-1
|
| Geobacter sp. FRC-32 |
GeobDRAFT_0045 |
132 |
Geofr132 |
dp-3
|
|
GeobDRAFT_2959 |
135 |
Geofr135 |
dp-1
|
| Geobacter sulfurreducens PCA |
GSU0256 |
145 |
Geosu145 |
-
|
|
GSU0402 |
135 |
Geosu135 |
dp-1
|
|
GSU1042 |
134 |
Geosu134 |
dp-2a
|
|
GSU2635 |
139 |
Geosu139 |
dp-2a
|
|
GSU2929 |
131 |
Geosu131 |
dp-2a
|
| Geobacter uraniumreducens Rf4 |
GuraDRAFT_0025 |
135 |
Geour135 |
dp-1
|
|
GuraDRAFT_3613 |
138 |
Geour138 |
dp-2a
|
| Delta Protebacterium MLMS-1 |
MldDRAFT_0394 |
135 |
Mlmso135 |
dp-1
|
|
MldDRAFT_0514,
|
| MldDRAFT_2412 |
148 or
|
| 149 |
Mlmso148 |
dp-1
|
| Pelobacter carbinolicus DSM 2380 |
Pcar_0508 |
135 |
Pelca135 |
dp-1
|
| Pelobacter propionicus DSM 2379 |
PproDRAFT_0319 |
138 |
Pelpr138 |
dp-2a
|
|
PproDRAFT_1345 |
143 |
Pelpr143 |
dp-3
|
Epsilon Proteobacteria
| Strain |
Locus Tag |
Length |
Code |
Group
|
| Campylobacter coli RM2228 |
CCO0085 |
268 |
Camco268 |
ep-1
|
|
CCO0211 |
112 (200) |
Camco200 |
ep-4
|
|
CCO0213, CCO0212 |
94, 120 (210) |
Camco210 |
ep-5
|
|
CCO0127 |
203 |
Camco203 |
ep-4
|
|
CCO0128 |
229 |
Camco229 |
ep-5
|
|
CCO1302 |
199 |
Camco199 |
ep-3
|
| C. fetus 82-40 |
CFF8240_1699 |
183 |
Camfe183 |
ep-?
|
| C. jejuni jejuni NCTC 11168 |
Cj0045c |
240 |
CamjeN240 |
ep-1
|
|
Cj0241c |
133 |
CamjeN133 |
ep-2
|
|
Cj1224 |
199 |
CamjeN199 |
ep-3
|
| C. jejuni RM1221 |
CJE0044 |
254 |
CamjeR254 |
ep-1
|
|
CJE1359 |
199 |
CamjeR199 |
ep-3
|
| C. jejuni jejuni CF93-6 |
CJJCF936_0070 |
241 |
CamjeC241 |
ep-1
|
|
CJJCF936_0096, CJJCF936_0095 |
79, 116 (188) |
CamjeC188 |
ep-4b
|
|
CJJCF936_0259 |
133 |
CamjeC133 |
ep-2
|
|
CJJCF936_1308 |
199 |
CamjeC199 |
ep-3
|
| C. jejuni jejuni HB93-13 |
CJJHB9313_0064 |
239 |
CamjeH239 |
ep-1
|
|
CJJHB9313_0090, CJJHB9313_0089 |
79, 116 (188) |
CamjeH188 |
ep-4b
|
|
CJJHB9313_0250 |
133 |
CamjeH133 |
ep-2
|
|
CJJHB9313_1232 |
199 |
CamjeH199 |
ep-3
|
| C. jejuni jejuni 81-176 |
CJJ81176_0083 |
144 |
CamjeE144 |
ep-1
|
|
CJJ81176_0109, CJJ81176_0109 |
79, 116 (188) |
CamjeE188 |
ep-4b
|
|
CJJ81176_0266 |
133 |
CamjeE133 |
ep-2
|
|
CJJ81176_1237 |
199 |
CamjeE199 |
ep-3
|
| C. jejuni jejuni 84-25 |
CJJ8425_0078 |
239 |
CamjeF239 |
ep-1
|
|
CJJ8425_0103, CJJ8425_0102 |
79, 116 (188) |
CamjeF188 |
ep-4b
|
|
CJJ8425_0194 |
133 |
CamjeF133 |
ep-2
|
|
CJJ8425_1247 |
199 |
CamjeF199 |
ep-3
|
| C. jejuni jejuni 260.94 |
CJJ26094_0077 |
254 |
CamjeX254 |
ep-1
|
|
CJJ26094_0094 |
202 |
CamjeX202 |
ep-4
|
|
CJJ26094_0096, CJJ26094_0095 |
96, 126 (214) |
CamjeX214 |
ep-5
|
|
CJJ26094_0259 |
133 |
CamjeX133 |
ep-2
|
|
CJJ26094_1282 |
199 |
CamjeX199 |
ep-3
|
| C. jejuni doylei 269.97 |
Cjejd_01001230 |
131 |
CamjeY131 |
ep-2
|
|
Cjejd_01001334 |
53 (?) |
CamjeY53 |
(ep-4b)
|
|
Cjejd_01001357 |
240 |
CamjeY240 |
ep-1
|
| C. lari RM2100 |
CLA1482 |
98 (194) |
Camla194 |
ep-?
|
|
CLA1484 |
187 |
Camla187 |
ep-?
|
| C. upsaliensis RM3195 |
CUP0593 |
199 |
Camup199 |
ep-3
|
|
CUP0688 |
202 |
Camup202 |
ep-4
|
|
CUP0689 |
217 |
Camup217 |
ep-5
|
|
CUP1319 |
233 |
Camup233 |
ep-1
|
|
CUP1540 |
106 |
Camup106 |
ep-2
|
| Helicobacter hepaticus ATCC 51449 |
HH0004 |
184 |
Helhe184 |
ep-?
|
|
HH0005 |
187 |
Helhe187 |
ep-?
|
| Wolinella succinogenes DSM 1740 |
WS1527 |
168 |
Wolsu168 |
ep-?
|
Gram Positive Bacteria
| Strain |
Locus Tag |
Length |
Code |
Group
|
| Alkaliphilus metalliredigenes QYMF |
AmetDRAFT_1910 |
137 |
Alkme137 |
cl-1b
|
| Caldocellulosiruptor saccharolyticus DSM 8903 |
CsacDRAFT_0685 |
138 |
Calsa138 |
cl-2?
|
| Clostridium acetobutylicum ATCC 824 |
CAC0069 |
129 |
Cloac129 |
cl-1a
|
| Clostridium beijerinckii NCIMB 8052 |
CbeiDRAFT_0566 |
129 |
Clobe129a |
cl-1a
|
|
CbeiDRAFT_1664 |
130 |
Clobe130 |
cl-1a
|
|
CbeiDRAFT_1829 |
129 |
Clobe129b |
cl-1a
|
|
CbeiDRAFT_2542 |
185 (136) |
Clobe136 |
cl-3
|
|
CbeiDRAFT_2544 |
135 |
Clobe135 |
cl-3
|
|
CbeiDRAFT_3403 |
133 |
Clobe133 |
cl-3
|
| Clostridium sp. OhILAs |
ClosDRAFT_0906 |
131 |
Clooh131 |
cl-3?
|
|
ClosDRAFT_1177 |
142 |
Clooh142 |
cl-2
|
|
ClosDRAFT_1393 |
137 |
Clooh137 |
cl-1b
|
| Clostridium phytofermentans ISDg |
CphyDRAFT_1318 |
143 |
Cloph143 |
cl-1?
|
|
CphyDRAFT_1890 |
129 |
Cloph129 |
cl-1a
|
| Clostridium tetani E88 |
CTC02359 |
137 |
Clote137 |
cl-1b
|
| Clostridium thermocellum ATCC 27405 |
CtheDRAFT_2261 |
129 |
Cloth129 |
cl-1a
|
|
CtheDRAFT_3296 |
140 |
Cloth140 |
cl-2
|
| Desulfitobacterium hafniense DCB-2 |
Dhaf_1230 |
135 |
DeshaD135 |
cl-1a
|
|
Dhaf_3846 |
139 |
DeshaD139 |
cl-2
|
| Desulfitobacterium hafniense Y51 |
DSY0238 |
144 |
DeshaY144 |
cl-1a
|
|
DSY1174 |
139 |
DeshaY139 |
cl-2
|
| Syntrophomonas wolfei Goettingen |
Swol_2168 |
130 |
Synwo130 |
cl-1a
|
| Thermoanaerobacter tengcongensis MB4 |
TTE0259 |
133 |
Thete133 |
-
|
| Symbiobacterium thermophilum IAM 14863 |
STH1393 |
147 |
Symth147 |
cl-3?
|
Other Prokaryotes
| Strain |
Locus Tag |
Length |
Code |
Group
|
| Acidobacteria Ellin345 |
Acid345_3649 |
155 |
Aciel155 |
Acidobacteria
|
|
Acid345_3650 |
132 |
Aciel132 |
“
|
|
Acid345_3651 |
152 |
Aciel152 |
“
|
|
Acid345_4443 |
134 |
Aciel134 |
“
|
| Solibacter usitatus Ellin6076 |
Acid_2398 |
141 |
Solus141 |
“
|
|
Acid_5150 |
166 |
Solus166 |
“
|
|
Acid_5914 |
133 |
Solus133 |
"
|
| Thermosynechococcus elongatus BP-1 |
tlr1372 |
149 |
Theel149 |
Cyanobacteria
|
|
tlr1993 |
136 |
Theel136 |
"
|
| Aquifex aeolicus VF5 |
aq_1719 |
131 |
Aquae131 |
Aquificae
|
| Hydrogenobacter thermophilus |
- |
131 |
Hydth131 |
Aquificae
|
| Kuenenia stuttgartensis |
kustc1183 |
129 |
Kuest129 |
Planctomycetes
|
| Treponema denticola ATCC 35405 |
TDE1013 |
|
|
Spirochaetes
|
|
TDE1302 |
|
|
“
|
| Methanocaldococcus jannaschii DSM 2661 |
MJ0747 |
147 or 169 |
Metja147 |
Archaea
|
| Methanospirillum hungatei JF-1 |
Mhun_0966 |
135 |
Methu135a |
Archaea
|
|
Mhun_2752 |
135 |
Methu135b |
“
|
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