Cfrench:hemanalysis1

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Analysis of short chain bacteriohemerythrins

Alpha Proteobacteria

Strain Locus Tag Length Code Group
Magnetococcus sp. MC-1 Mmc1_1179 124 Magco124 bp-1?
Mmc1_2231 123 Magco134 -
Mmc1_3235 174 Magco174 -
Mmc1_3358 160 Magco160 -
Magnetospirillum gryphiswaldense MSR1 mgI449 159 Maggr159 ap-1a
mgI478, ORF13 150 or 149 Maggr150 ap-1b
Magnetospirillum magneticum AMB-1 amb0226 135 Magam135 ap-1d
amb0520 122 Magam122 ap-7
amb0569 129 Magam129 ap-1f
amb0737 146 Magam146 ap-6
amb0935 157 Magam157 ap-1b
amb0985 171 Magam171a ap-1a
amb1378 169 Magam169 ap-4
amb1415 132 Magam132 ap-1e
amb1549 134 Magam134 ap-1g
amb2239 142 Magam142 ap-5a
amb2249 143 Magam143 ap-8
amb2654 140 Magam140a ap-5b
amb2739 179 Magam179 ap-3b
amb2800 171 Magam171b ap-2b
amb3091 147 Magam147 ap-3a
amb3835 156 Magam156 ap-1c
amb3966 148 Magam148 ap-4a
amb4136 140 Magam140b ap-2e?
amb4171 138 Magam138 ap-2c
amb4265 144 Magam144 ap-2a
amb4296 136 Magam136 ap-4
amb4401 161 Magam161 ap-2d
Magnetospirillum magnetotacticum MS-1 Magn03005600 134 Magms134a ap-1g
Magn03007081 150 Magms150 ap-3b
Magn03007233 140 Magms140 ap-5b
Magn03007342 114 Magms114 ap-1c
Magn03007440 135 Magms135a ap-5a
Magn03007701 159 Magms159 ap-1a
Magn03007822 120 Magms120a ap-8
Magn03008338 127 Magms127 -
Magn03008342 132 Magms132 ap-1e
Magn03008958 139 Magms139 ap-3a
Magn03008494 120 Magms120b ap-7
Magn03008990 134 Magms134b ap-6
Magn03009649 122 Magms122 -
Magn03009746 144 Magms144a -
Magn03009911 136 Magms136 ap-2c
Magn03010109 131 Magms131 -
Magn03010161 144 Magms144b ap-2a
Magn03010652 146 Magms146 ap-4a
Magn03010772 158 Magms158 -
Magn03010975 135 Magms135b ap-1d
Magn03011053 129 Magms129 ap-1f
Mesorhizobium sp. BNC1 Meso_4300 134 Mesbn134 -
Rhodospirillum rubrum ATCC 11170 Rru_A1655 148 Rhoru148 ap-1
Rru_A3211 176 Rhoru176 ap-2
Rru_A2082 209 Rhoru209 ap-3

Beta Proteobacteria

Strain Locus Tag Length Code Group
Acidovorax avenae AAC00-1 AAveDRAFT_4356 171 Aciav171 bp-1b
Acidovorax sp. JS42 AjsDRAFT_4228 168 Acijs168 bp-1b
AjsDRAFT_3609 180 Acijs180 X
Bordetella avium 197N BAV0601 148 Borav148 bp-2a
Burkholderia mallei ATCC23344 BMA0605 149 Burma149 bp-1a
Burkholderia mallei GB8 horse 4 BmalG_01002260 149 Burma149 bp-1a
Burkholderia mallei FMH BmalF_02000813 149 Burma149 bp-1a
Burkholderia mallei JHU BmalJ_02001239 149 Burma149 bp-1a
Burkholderia mallei SAVP1 BmalS_02000673 149 Burma149 bp-1a
Burkholderia mallei 10229 Bmal1_02002528 149 Burma149 bp-1a
Burkholderia mallei 2002721280 Bmal2_03002101 149 Burma149 bp-1a
Burkholderia mallei 10399 Bmal10_03003258 149 Burma149 bp-1a
Burkholderia mallei NCTC 10247 BmalN_01003861 145 Burmp145 bp-1a
Burkholderia phymatum STM815 BphyDRAFT_6431 147 Burph147 bp-2b
Burkholderia pseudomallei 668 Bpse6_01003104 145 Burmp145 bp-1a
Burkholderia pseudomallei 1106b Bpse110_02002465 145 Burmp145 bp-1a
Burkholderia pseudomallei 1655 Bpse1_03002047 145 Burmp145 bp-1a
Burkholderia pseudomallei Pasteur BpseP_03004124 145 Burmp145 bp-1a
Burkholderia pseudomallei 406e Bpse4_03003105 145 Burmp145 bp-1a
Burkholderia pseudomallei 1106a Bpse11_03001529 145 Burmp145 bp-1a
Burkholderia pseudomallei 1710b BURPS1710b_2831 186 (141) Burps141 bp-1a
Burkholderia pseudomallei K96243 BPSL2377 141 Burps141 bp-1a
Burkholderia pseudomallei 1710a Bpse17_02004690 141 Burps141 bp-1a
Burkholderia pseudomallei S13 BpseS_03004721 141 Burps141 bp-1a
Burkholderia thailandensis E264 BTH_I1789 141 Burth141 bp-1a
Burkholderia vietnamiensis G4 Bcep1808DRAFT_0731 158 Burvi158 bp-2a
Burkholderia xenovorans LB400 Bxe_C0962 159 Burxe159 bp-2b
Bxe_C0584 165 Burxe165 bp-2b
Bxe_A3521 166 Burxe166 bp-2a
Comamonas testosteroni KF-1 CtesDRAFT_1489 179(159) Comte159 bp-3
CtesDRAFT_1954 211 Comte211 gp-1
CtesDRAFT_3164 165 Comte165a bp-2a
CtesDRAFT_4167 165 Comte165b bp-1b
Delftia acidovorans SPH-1 DaciDRAFT_3784 166 Delac166 bp-1b
DaciDRAFT_5656 213 Delac213 gp-1
Janthinobacterium lividum BR (none) 132 Janli132 bp-?
Janthinobacterium sp. J3 ORF33 149 Jansp149 bp-2b
Polaromonas naphthalenivorans CJ2 PnapDRAFT_2309 152 Polna152 bp-2a
PnapDRAFT_2635 168 Polna168 bp-1b
PnapDRAFT_4966 155 Polna155 bp-3
Ralstonia eutropha H16 H16_A2797 146 RaleuH146 bp-1a
Ralstonia eutropha JMP134 Reut_A0820 157 RaleuJ157 bp-1a
Ralstonia metallidurans CH34 Rmet_2637 160 Ralme160 bp-1a
Ralstonia solanacearum GMI1000 RSc0777 137 RalsoG137 bp-1a
Ralstonia solanacearum UW551 RRSL_01522 137 RalsoU137 bp-1a
Verminephrobacter eiseniae EF01-2 VeisDRAFT_1888 168 Verei168 bp-2a?
Dechloromonas aromatica RCB Daro_1333 161 Decar161 bp-?
Daro_1406 134 Decar134 X
Daro_1420 125 Decar125 bp-?
Daro_1617 160 Decar160 gp-1
Daro_1660 128 Decar128 X
Daro_2268 108? Decar108 X
Daro_2762 146 Decar146 bp-2b
Daro_3696 142 Decar142 X

Gamma Proteobacteria

Strain Locus Tag Length Code Group
Alcanivorax borkumensis SK2 ABO_0064 154 Alcbo154 gp-1
Alkalilimnicola ehrlichei MLHE-1 Mlg_0407 161 Alkeh161 gp-1
Azotobacter vinelandii AvOP AvinDRAFT_4714 134 Azovi134 bp-?
Colwellia psychrerythraea 34H CPS_1745 131 Colps131 gp-2?
CPS_4221 188 Colps188 gp-2
CPS_4236 192 Colps192 gp-2
marine gamma proteobacterium HTCC2207 GB2207_10903 174 Unkga174 gp-3
Methylococcus capsulatus Bath MCA0715 131 Metca131 -
Oceanospirillum sp. MED92 MED92_09166 121 Oceme121 -
MED92_10439 129 Oceme129 -
MED92_11109 135 Oceme135 gp-3
Pseudomonas aeruginosa PAO1 PA1673 153 Pseae153 gp-1
Pseudomonas aeruginosa C3719 PaerC_01000653 153 Pseae153 gp-1
Pseudomonas aeruginosa 2192 Paer2_01000661 153 Pseae153 gp-1
Pseudomonas aeruginosa PACS2 PaerPA_01002136 153 Pseae153 gp-1
Pseudomonas aeruginosa UCBPP-PA14 PA14_42860 153 Pseae153 gp-1
Pseudomonas aeruginosa PA7 PaerP_01003615 153 Pseae153 gp-1
Pseudomonas resinovorans plasmid ORF33 146 or 165 Psere146 bp-2b
Reinekea sp. MED297 MED297_01480 150 Reime150 gp-1
MED297_01485 151 Reime151 gp-1
Shewanella woodyi ATCC 51908 SwooDRAFT_2326 159 Shewo159 -
Xanthomonas axonopodis 306 XAC2483 153 Xanax153 gp-1
Xanthomonas campestris 8004 XC_1765 153 XancaX153 gp-1
Xanthomonas campestris 85-10 XCV2661 153 XancaY153 gp-1
Xanthomonas campestris ATCC 33913 XCC2351 153 XancaA153 gp-1

Delta Proteobacteria

Strain Locus Tag Length Code Group
Strain Locus Tag Length Code Group
Anaeromyxobacter dehalogenans 2CP-C Adeh_0092 146 Anade146 dp-2b
Adeh_0219 138 Anade138 dp-2b
Adeh_0383 147 Anade147 gp-3?
Adeh_0492 144 Anade144a -
Adeh_0575 144 Anade144b dp-2b?
Adeh_3016 133 Anade133a dp-2b
Adeh_3017 133 Anade133b dp-2b
Adeh_4100 133 Anade133c dp-2b
Bdellovibrio bacteriovorus HD100 Bd3532 136 Bdeba136 -
Desulfotalea psychrophila LSv54 DP1787 156 Desps156 -
Desulfovibrio desulfuricans G20 Dde_0253 150 Desde150 dp-4
Desulfovibrio vulgaris DP4 DvulDRAFT_0258 137 DesvuD137 dp-4
Desulfovibrio vulgaris Hildenborough DVU3049 137 DesvuH137 dp-4
Desulfuromonas acetoxidans DSM 684 Dace_1122 142 Desac142 dp-4?
Dace_1123 199 Desac199 dp-3?
Dace_1813 133 Desac133 dp-3
Dace_1814 132 Desac132b dp-3
Dace_2627 132 Desac132a dp-3
Geobacter metallireducens GS-15 Gmet_0834 155 Geome155 dp-2a
Gmet_3121 135 Geome135 dp-1
Geobacter sp. FRC-32 GeobDRAFT_0045 132 Geofr132 dp-3
GeobDRAFT_2959 135 Geofr135 dp-1
Geobacter sulfurreducens PCA GSU0256 145 Geosu145 -
GSU0402 135 Geosu135 dp-1
GSU1042 134 Geosu134 dp-2a
GSU2635 139 Geosu139 dp-2a
GSU2929 131 Geosu131 dp-2a
Geobacter uraniumreducens Rf4 GuraDRAFT_0025 135 Geour135 dp-1
GuraDRAFT_3613 138 Geour138 dp-2a
Delta Protebacterium MLMS-1 MldDRAFT_0394 135 Mlmso135 dp-1
MldDRAFT_0514,
MldDRAFT_2412 148 or
149 Mlmso148 dp-1
Pelobacter carbinolicus DSM 2380 Pcar_0508 135 Pelca135 dp-1
Pelobacter propionicus DSM 2379 PproDRAFT_0319 138 Pelpr138 dp-2a
PproDRAFT_1345 143 Pelpr143 dp-3

Epsilon Proteobacteria

Strain Locus Tag Length Code Group
Campylobacter coli RM2228 CCO0085 268 Camco268 ep-1
CCO0211 112 (200) Camco200 ep-4
CCO0213, CCO0212 94, 120 (210) Camco210 ep-5
CCO0127 203 Camco203 ep-4
CCO0128 229 Camco229 ep-5
CCO1302 199 Camco199 ep-3
C. fetus 82-40 CFF8240_1699 183 Camfe183 ep-?
C. jejuni jejuni NCTC 11168 Cj0045c 240 CamjeN240 ep-1
Cj0241c 133 CamjeN133 ep-2
Cj1224 199 CamjeN199 ep-3
C. jejuni RM1221 CJE0044 254 CamjeR254 ep-1
CJE1359 199 CamjeR199 ep-3
C. jejuni jejuni CF93-6 CJJCF936_0070 241 CamjeC241 ep-1
CJJCF936_0096, CJJCF936_0095 79, 116 (188) CamjeC188 ep-4b
CJJCF936_0259 133 CamjeC133 ep-2
CJJCF936_1308 199 CamjeC199 ep-3
C. jejuni jejuni HB93-13 CJJHB9313_0064 239 CamjeH239 ep-1
CJJHB9313_0090, CJJHB9313_0089 79, 116 (188) CamjeH188 ep-4b
CJJHB9313_0250 133 CamjeH133 ep-2
CJJHB9313_1232 199 CamjeH199 ep-3
C. jejuni jejuni 81-176 CJJ81176_0083 144 CamjeE144 ep-1
CJJ81176_0109, CJJ81176_0109 79, 116 (188) CamjeE188 ep-4b
CJJ81176_0266 133 CamjeE133 ep-2
CJJ81176_1237 199 CamjeE199 ep-3
C. jejuni jejuni 84-25 CJJ8425_0078 239 CamjeF239 ep-1
CJJ8425_0103, CJJ8425_0102 79, 116 (188) CamjeF188 ep-4b
CJJ8425_0194 133 CamjeF133 ep-2
CJJ8425_1247 199 CamjeF199 ep-3
C. jejuni jejuni 260.94 CJJ26094_0077 254 CamjeX254 ep-1
CJJ26094_0094 202 CamjeX202 ep-4
CJJ26094_0096, CJJ26094_0095 96, 126 (214) CamjeX214 ep-5
CJJ26094_0259 133 CamjeX133 ep-2
CJJ26094_1282 199 CamjeX199 ep-3
C. jejuni doylei 269.97 Cjejd_01001230 131 CamjeY131 ep-2
Cjejd_01001334 53 (?) CamjeY53 (ep-4b)
Cjejd_01001357 240 CamjeY240 ep-1
C. lari RM2100 CLA1482 98 (194) Camla194 ep-?
CLA1484 187 Camla187 ep-?
C. upsaliensis RM3195 CUP0593 199 Camup199 ep-3
CUP0688 202 Camup202 ep-4
CUP0689 217 Camup217 ep-5
CUP1319 233 Camup233 ep-1
CUP1540 106 Camup106 ep-2
Helicobacter hepaticus ATCC 51449 HH0004 184 Helhe184 ep-?
HH0005 187 Helhe187 ep-?
Wolinella succinogenes DSM 1740 WS1527 168 Wolsu168 ep-?

Gram Positive Bacteria

Strain Locus Tag Length Code Group
Alkaliphilus metalliredigenes QYMF AmetDRAFT_1910 137 Alkme137 cl-1b
Caldocellulosiruptor saccharolyticus DSM 8903 CsacDRAFT_0685 138 Calsa138 cl-2?
Clostridium acetobutylicum ATCC 824 CAC0069 129 Cloac129 cl-1a
Clostridium beijerinckii NCIMB 8052 CbeiDRAFT_0566 129 Clobe129a cl-1a
CbeiDRAFT_1664 130 Clobe130 cl-1a
CbeiDRAFT_1829 129 Clobe129b cl-1a
CbeiDRAFT_2542 185 (136) Clobe136 cl-3
CbeiDRAFT_2544 135 Clobe135 cl-3
CbeiDRAFT_3403 133 Clobe133 cl-3
Clostridium sp. OhILAs ClosDRAFT_0906 131 Clooh131 cl-3?
ClosDRAFT_1177 142 Clooh142 cl-2
ClosDRAFT_1393 137 Clooh137 cl-1b
Clostridium phytofermentans ISDg CphyDRAFT_1318 143 Cloph143 cl-1?
CphyDRAFT_1890 129 Cloph129 cl-1a
Clostridium tetani E88 CTC02359 137 Clote137 cl-1b
Clostridium thermocellum ATCC 27405 CtheDRAFT_2261 129 Cloth129 cl-1a
CtheDRAFT_3296 140 Cloth140 cl-2
Desulfitobacterium hafniense DCB-2 Dhaf_1230 135 DeshaD135 cl-1a
Dhaf_3846 139 DeshaD139 cl-2
Desulfitobacterium hafniense Y51 DSY0238 144 DeshaY144 cl-1a
DSY1174 139 DeshaY139 cl-2
Syntrophomonas wolfei Goettingen Swol_2168 130 Synwo130 cl-1a
Thermoanaerobacter tengcongensis MB4 TTE0259 133 Thete133 -
Symbiobacterium thermophilum IAM 14863 STH1393 147 Symth147 cl-3?

Other Prokaryotes

Strain Locus Tag Length Code Group
Acidobacteria Ellin345 Acid345_3649 155 Aciel155 Acidobacteria
Acid345_3650 132 Aciel132
Acid345_3651 152 Aciel152
Acid345_4443 134 Aciel134
Solibacter usitatus Ellin6076 Acid_2398 141 Solus141
Acid_5150 166 Solus166
Acid_5914 133 Solus133 "
Thermosynechococcus elongatus BP-1 tlr1372 149 Theel149 Cyanobacteria
tlr1993 136 Theel136 "
Aquifex aeolicus VF5 aq_1719 131 Aquae131 Aquificae
Hydrogenobacter thermophilus - 131 Hydth131 Aquificae
Kuenenia stuttgartensis kustc1183 129 Kuest129 Planctomycetes
Treponema denticola ATCC 35405 TDE1013 Spirochaetes
TDE1302
Methanocaldococcus jannaschii DSM 2661 MJ0747 147 or 169 Metja147 Archaea
Methanospirillum hungatei JF-1 Mhun_0966 135 Methu135a Archaea
Mhun_2752 135 Methu135b

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