CellDesigner and Virtual Cell
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This presentation from the BioMIBLab Summer 2006 Workshop is a comparison of two imaging bioinformatics tools.
Synopsis
- CellDesigner
A simulation tool that models biochemical networks.
- Virtual Cell
A simulation tool that models biochemical networks with a Java interface.
Features
- CellDesigner
- Free download; no registration required
- SBML compliant-standardized technology
- Can be run on multiple platforms
- Graphical Notation, Mathematical Notation
- Can select different species types
- Virtual Cell
- Free but must be registered user
- Can only be run from website
- Requires Java Runtime Environment
- 3 components
- Modeling framework
- Mathematics framework
- Internet based
- Graphical and mathematical interfaces.
- General species, features tools.
- Several ODE solvers
- Has many tutorials
Full Presentation
CellDesigner and Virtual Cell PowerPoint Presentation
Bibliography
- Cell Designer
- "CellDesigner: a process diagram editor for gene-regulatory and biochemical networks" Funahashi, et al.
Support Documents
- CellDesigner
- Control Panel Tutorial
- Virtual Cell
- Users Guide
- Quick Start Guide
- Tutorials
