Cconboy:Terminator Characterization/Methods

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Sample Preparation

Overnight cultures were inoculated from plated colonies in 5 mL of LB medium with 50 ug/mL Ampicillin. Samples were grown at 37 C. In late log phase (OD600 ~1.5-2) 1 mL of culture was pelleted, resuspended in 1 mL PBS, and stored on ice for analysis by flow cytometry.

Flow cytometry was performed using a FACS Aria machine equipped with two lasers, providing excitation at 405 nm for CFP and 480 nm for YFP. CFP fluorescence was detected using a 475/85 filter (i.e., 475 +/-43 nm). YFP fluorescence was detected with a 530/30 filter (i.e., 530 +/-30nm).


Population Average Termination Efficiency: Average terminator read-through was derived from the mean fluorescence ratio of YFP/CFP, normalized to the ratio of the no-terminator control construct (BBa_I7003). This analysis makes the assumption that the average YFP/CFP ratio is correlated with the ratio of PoPS-in/PoPS-out. Termination efficiency is consequently defined as one minus the terminator read-through:

Termination efficiency = 1 - (mean YFP/mean CFP*2.96)