Calendar:HD-2011/2011-7-28

From OpenWetWare
Jump to: navigation, search

Proportal Project

Update publications

Update Publications for the following phage genomes to reflect Matt Sullivan's 2010 phage paper which described 16 phage genomes, SSM1, SSSM5, SSSM7, SSM2, SShM2, Syn1, Syn33, Syn19, Syn9, SPM2, PSSM7, PRSM4, PHM2, PHM1, PSSM4, PSSM2

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments.
Sullivan MB, Huang KH, Ignacio-Espinoza JC, Berlin AM, Kelly L, Weigele PR, DeFrancesco AS, Kern SE, Thompson LR, Young S, Yandava C, Fu R, Krastins B, Chase M, Sarracino D, Osburne MS, Henn MR, Chisholm SW.
Environ Microbiol. 2010 Nov;12(11):3035-56.

Matt Henn's paper which describes phage genome sequencing, same phage genomes as above:

Analysis of high-throughput sequencing and annotation strategies for phage genomes.
Henn MR, Sullivan MB, Stange-Thomann N, Osburne MS, Berlin AM, Kelly L, Yandava C, Kodira C, Zeng Q, Weiand M, Sparrow T, Saif S, Giannoukos G, Young SK, Nusbaum C, Birren BW, Chisholm SW.
PLoS One. 2010

Solution

First, update those two papers in data_publication table. Then create associations between those two papers and phage genomes defined in data_project table. Store such associations into data_projectpub table.