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<html> <head> <style> /*

  1. bodyContent{text-align:center;}
  • /

ul.polaroids { width: 970px; margin: 0 0 18px -30px; } ul.polaroids li { display: inline; } ul.polaroids a{display: inline; float: left; margin: 0 0 27px 30px; width: auto; padding: 10px 10px 15px; text-align: center; font-family: "Marker Felt", sans-serif; text-decoration: none; color: #333; font-size: 18px; -webkit-transform: rotate(-2deg); -webkit-transition: -webkit-transform .15s linear; -moz-transform: rotate(-2deg); } ul.polaroids img { display: block; width: 300px; margin-bottom: 12px; -webkit-transform: rotate(-2deg); -webkit-transition: -webkit-transform .15s linear; -moz-transform: rotate(-2deg); }

  1. content{

color:#111; background:none; border:none; } .portlet .pBody { border:none; background:none; z-index:-1; } .portlet a{color:#white;} .pBody a{color:#white;}

  1. footer{background:none; border:none;}
  2. footer li{color:#333;;}
  3. footer li a {color:#333;;}

h1, h2, h3, h4, h5, h6, p, a, pre{color:#333;; font-family: 'Trebuchet MS', Helvetica, sans-serif;}

  1. menu ul{list-style:none;}
  2. menu ul li{float:left; width:125px; text-align:center; background:#234ade; margin:5px; cursor:pointer}
  1. content_container{width:1%;height:10px; background:#333; position:absolute; top:260px; display:none; left:495%; opacity:0.8;

border-radius:20px;-moz-border-radius:20px;-webkit-border-radius:20px; border:1px #AAA solid; }

  1. close_container{position:absolute;left:98.5%;top:5px;,cursor:pointer;}

.contents{float:none; position:absolute; width:89%; text-align:justify; top:280px; display:none; height:316px; overflow:auto; padding:16px;}

.slide_show_pic{ position:absolute; top:-40px; left:160px; display:none; height:400px; }


.stack { position: fixed; bottom: 60px; right: 60px; } .stack > img { position: relative; cursor: pointer; padding-top: 35px; z-index: 2; left:20px;} .stack ul { list-style: none; position: absolute; top: 5px; cursor: pointer; z-index: 1; } .stack ul li { position: absolute; } .stack ul li img { border: 0; } .stack ul li span { display: none; } .stack .openStack li span {

   font-family: "Lucida Grande", Lucida, Verdana, sans-serif;  
   height: 14px;  
   top: 17px;  
   line-height: 14px;  
   border: 0;  
   padding: 3px 10px;  
   border-radius: 10px;  
   -webkit-border-radius: 10px;  
   -moz-border-radius: 10px;  
   color: #fcfcfc;  
   text-align: center;  
   text-shadow: #000 1px 1px 1px;  
   opacity: .85;  
   filter: alpha(opacity = 85);  


.stack img{width:50px;}

/* IE Fixes */ .stack { _position: absolute; } .stack ul { _z-index:-1; _top:-15px; } .stack ul li { *right:5px; }

/*stack close*/

  1. sidebar_bg{

width:150px; background:#000; opacity:0.6; height:830px; display:block; position:absolute; left:-156px; top:-50px; z-index:-100; }


ul.polaroids a:after { content: attr(title); }

   /* By default, we tilt all our images -2 degrees */
   ul.polaroids a {
   -webkit-transform: rotate(-2deg);
   -moz-transform: rotate(-2deg);
   /* Rotate all even images 2 degrees */
   ul.polaroids li:nth-child(even) a {
   -webkit-transform: rotate(2deg);
   -moz-transform: rotate(2deg);
   /* Don't rotate every third image, but offset its position */
   ul.polaroids li:nth-child(3n) a {
   -webkit-transform: none;
   -moz-transform: none;
   position: relative;
   top: -5px;
   /* Rotate every fifth image by 5 degrees and offset it */
   ul.polaroids li:nth-child(5n) a {
   -webkit-transform: rotate(5deg);
   -moz-transform: rotate(5deg);
   position: relative;
   right: 5px;
   /* Keep default rotate for every eighth, but offset it */
   ul.polaroids li:nth-child(8n) a {
   position: relative;
   top: 8px;
   right: 5px;
   /* Keep default rotate for every eleventh, but offset it */
   ul.polaroids li:nth-child(11n) a {
   position: relative;
   top: 3px;
   left: -5px;
   /* Scale the images on hover, add transitions for smoothing things out, and ensure the hover appears on top */
   ul.polaroids img:hover {
   -webkit-transform: scale(1.25);
   -moz-transform: scale(1.25);
   position: relative;
   z-index: 5;


.stuff_contents{ position:fixed; top:8%; left:13%; display:none; width:80%; color:white; z-index:101; }

  1. contents_stuff p{width:80%;}

</style> <script type="text/javascript" src=""/></script> <script>

jQuery(function () {

   // Stack initialize  
   var openspeed = 300;  
   var closespeed = 300;  
       //reverse above  
       var $el=$(this);  
       $'openStack').children('li').animate({top: '55px', left: '-10px'}, closespeed);  
       $'li a>img').animate({width: '50px', marginLeft: '0'}, closespeed);  
       $el.animate({paddingTop: '35'});  
       var vertical = 0;  
       var horizontal = 0;  
       var $el=$(this);  
           $(this).animate({top: '-' + vertical + 'px', left: horizontal + 'px'}, openspeed);  
           vertical = vertical + 55;  
           horizontal = (horizontal+.75)*2;  
       ${top: '-50px', left: '10px'}, openspeed).addClass('openStack')  
          .find('li a>img').animate({width: '50px', marginLeft: '9px'}, openspeed);  
       $el.animate({paddingTop: '0'});  
   // Stacks additional animation  
   $('.stack li a').hover(function(){  
       $("img",this).animate({width: '56px'}, 100);  
       $("span",this).animate({marginRight: '30px'});  
       $("img",this).animate({width: '50px'}, 100);  
       $("span",this).animate({marginRight: '0'});  


function open_menu(){ var openspeed = 300;

   var closespeed = 300; 

var vertical = 0;

       var horizontal = 0;  
       var $el=$('.stack>img');  
           $(this).animate({top: '-' + vertical + 'px', left: horizontal + 'px'}, openspeed);  
           vertical = vertical + 75;  
           horizontal = (horizontal+.75)*2;  
       ${top: '-50px', left: '10px'}, openspeed).addClass('openStack')  
          .find('li a>img').animate({width: '50px', marginLeft: '9px'}, openspeed);  
       $el.animate({paddingTop: '0'});


jQuery(document).ready(function(){ var name; $(".picture").click(function(){ name="#"+$(this).attr("title"); $("#data_container").fadeIn(); $(name).fadeIn(); });

$("#close_dialog").click(function(){ $("#data_container").fadeOut(); $(name).fadeOut(); });


</script> </head>

<body onload="open_menu()">


Project Goals

  1. Make an aggregating molecule with single strand appendages.
  2. Introduce reversible binding between aggregator and target molecule..

Project Steps [planned]:

  1. Instead of directly making an aggregator molecule of a big size [greater than 0.2 microns] make a smaller aggregator molecule.
  2. Test whether we can actually make a molecule which has single strand appendages on it.
  3. Take an image to confirm structure.
  4. Make a larger aggregator molecule.
  5. Introduce reversible binding.

Project steps accomplished:

  1. We made the Cadnano design of the large aggregator molecule
  2. We made the Cadnano design of a small aggregator molecule
  3. We made the small aggregator molecule
  4. Due to technical difficulties in equipment, we could not obtain AFM or TEM images
  5. We proposed a different method to test whether the structure was actually made or not by the following 2 methods:
    • Measuring absorbance at 260nm before the annealing reaction and after the reaction, and comparing them.
    • Running a gel to locate our structure near the bands of expected molecular weight markers.


</body> </html>