BioMicroCenter:BioinfoClasses

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Teaching Schedule

DATE TIME Instructor Location Room Topic
Mon May 11, 2015 2pm-3pm Duanduan Ma Building 76 76-156a&b Introduction to UNIX and the KI/BioMicro computational resources
Mon Jun 15, 2015 1:30pm-3pm Duanduan Ma Building 68 68-374 Follow Up Course of Introduction to UNIX and the KI/BioMicro computational resources
Mon Jul 13, 2015 10am-11am Charlie Whittaker Building 76 76-156a&b Introduction to Spotfire
Mon Aug 10, 2015 1:30pm-3pm Duanduan Ma Building 56 56-602 Introduction to UNIX and the KI/BioMicro computational resources
Mon Sep 14, 2015 1pm-4pm Duanduan Ma Building 68 68-374 Introduction to Python
Mon Oct 19, 2015 1pm-4pm Duanduan Ma Building 68 68-674 Introduction to Python
Mon Nov 9, 2015 1:30pm-3:30pm Jie Wu and Vincent Butty Building 68 68-181 A Traveller's companion to RNA-Seq interpretation
 QC slides[1] methods slides [2]
Mon Dec 14, 2015 2pm-4pm Duanduan Ma Building 68 68-474 Introduction to UNIX and the KI/BioMicro computational resources
Thur Jan 7, 2016 1:30pm-4:30pm Duanduan Ma Building 32 32-124 Quantitative Biology Workshop Outreach-Introduction to Python
Fri Jan 29, 2016 9:00am-11:00am Charlie Whittaker and Duanduan Ma Building 14N (DIRC) 14N-132 Visualizing and Accessing Genomic Data Using Publically Available Genome Browsers and Databases
Tue Feb 16, 2016 2:00am-3:00am Sara Strandberg-Qlucore Building 76 76-156B Introduction to Qlucore software
Mon Mar 7, 2016 2pm-4pm Duanduan Ma Building 56 56-602 Introduction to UNIX and the KI/BioMicro computational resources
Mon April 11, 2016 1pm-4pm Duanduan Ma Building 68 68-121 Introduction to R
Mon May 2, 2016 1pm-4pm Duanduan Ma Building 68 68-374 Introduction to R
Mon May 9, 2016 1pm-3pm Qlucore Building 14N(DIRC) 14N-132 Hands on training of Qlucore software
Mon June 6, 2016 2pm-4pm Duanduan Ma Building 68 68-374 Introduction to UNIX and the KI/BioMicro computational resources
Mon Jun 13, 2016 1pm-4pm Duanduan Ma Building 76 76-156A/B Introduction to R
Mon July 11, 2016 1pm-4pm Duanduan Ma Building 56 56-602 Introduction to R
Mon Aug 8, 2016 1pm-4pm Duanduan Ma Building 68 68-374 Introduction to R
Mon Sep 12, 2016 2pm-4pm Duanduan Ma Building 76 76-459 Introduction to UNIX and the KI/BioMicro computational resources
Tue Oct 18, 2016 1pm-3pm Duanduan Ma Building 68 68-274 Introduction to UNIX and the KI/BioMicro computational resources
Mon Nov 7, 2016 1:00pm-2:00pm Jie Wu & Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 1 [3]
Mon Nov 14, 2016 1:00pm-2:00pm Jie Wu & Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 2 [4]
Mon Dec 12, 2016 2pm-4pm Duanduan Ma Building 76 76-259 Introduction to UNIX and the KI/BioMicro computational resources
Thurs Jan 19, 2017 1pm-3pm Duanduan Ma Building 68 68-274 Introduction to UNIX and the KI/BioMicro computational resources
Fri Feb 3, 2017 12:00pm-2:00pm Charlie Whittaker and Duanduan Ma Building 14N (DIRC) 14N-132 Visualizing and Accessing Genomic Data Using Publically Available Genome Browsers and Databases
Mon Mar 13, 2017 2pm-4pm Duanduan Ma Building 68 68-374 Introduction to UNIX and the KI/BioMicro computational resources
Mon April 24, 2017 1pm-4pm Duanduan Ma Building 68 68-574 Introduction to Python
Mon May 1, 2017 1pm-4pm Duanduan Ma Building 68 68-374 Introduction to Python
Mon June 5, 2017 1pm-4pm Duanduan Ma Building 68 68-121 Introduction to Python
Mon July 10, 2017 1pm-4pm Duanduan Ma Building 76 76-559 Introduction to Python
Mon Aug 28, 2017 2pm-4pm Duanduan Ma Building 68 68-374 Introduction to UNIX and the KI/BioMicro computational resources
Mon Sep 25, 2017 2:00pm-3:00pm Vincent Butty Building 68 68-181 RNA-Seq Experimental design + QC ; Slides [5]
Mon Oct 2, 2017 1:00pm-2:00pm Vincent Butty Building 68 68-181 RNA-Seq analysis ; Slides [6]
Mon Nov 13, 2017 2pm-4pm Duanduan Ma Building 76 76-259 Introduction to UNIX and the KI/BioMicro computational resources
Mon Dec 11, 2017 1pm-4pm Duanduan Ma Building 56 56-602 Introduction to R
Wed Jan 31, 2018 10am-12pm Charlie Whittaker Building 14N (DIRC) 14N-132 Gene Set Enrichment Analysis
Mon Feb 12, 2018 1pm-4pm Duanduan Ma Building 76 76-459 Introduction to R
Mon Mar 12, 2018 2pm-4pm Duanduan Ma Building 56 56-602 Introduction to UNIX and the KI/BioMicro computational resources
Mon Apr 23, 2018 1:30pm-2:30pm Duanduan Ma Building 68 68-181 Introduction to Biopython
Mon May 14, 2018 2:30pm-3:30pm Duanduan Ma Building 76 76-259 Introduction to Biopython
Mon June 11, 2018 2:00pm-4:00pm Duanduan Ma Building 56 56-602 Introduction to UNIX and the KI/BioMicro computational resourceso Biopython
Mon July 16, 2018 2:30pm-4:00pm Duanduan Ma Building 68 68-121 Introduction of Python to biologists session 1
Mon August 13, 2018 2:30pm-4:00pm Duanduan Ma Building 76 76-559 Introduction of Python to biologists session 2
Mon September 10, 2018 2:00pm-4:00pm Duanduan Ma Building 56 56-602 Introduction to UNIX and the KI/BioMicro computational resources
Tue October 23, 2018 1:30pm-2:30pm Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 1 - Slides [7]
Mon November 5, 2018 1pm-2pm Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 2 - Slides [8]
Mon December 10, 2018 2:00pm-4:00pm Duanduan Ma Building 76 76-259 Introduction to UNIX and the KI/BioMicro computational resources
Thursday Jan 31, 2019 10am-12pm Charlie Whittaker Building 14N (DIRC) 14N-132 Gene Set Enrichment Analysis
Mon February 11, 2019 2:30pm-4:00pm Duanduan Ma Building 68 68-674 Introduction of Python to biologists session 1
Mon March 11, 2019 2:30pm-4:30pm Duanduan Ma Building 76 76-259 Introduction of Python to biologists session 2
Mon April 8, 2019 2:00pm-4:00pm Duanduan Ma Building 68 68-180 Introduction to UNIX and the KI/BioMicro computational resources
Mon May 13, 2019 2pm-4pm Duanduan Ma Building 68 68-121 Introduction to R session 1
Mon June 10, 2019 2pm-4pm Duanduan Ma Building 76 76-659 Introduction to R session 2
Mon July 8, 2019 2:00pm-4:00pm Duanduan Ma Building 68 68-574 Introduction to UNIX and the KI/BioMicro computational resources
Tue August 27, 2019 2:30pm-3:30pm Jingzhi Zhu & Duanduan Ma Building 76 76-659 How to install software packages yourself on computing clusters
Mon September 30, 2019 1:30pm-2:30pm Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 1
Mon October 7, 2019 1:30pm-2:30pm Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 2
Mon November 11, 2019 2:00pm-4:00pm Duanduan Ma Building 76 76-259 Introduction to UNIX and the KI/BioMicro computational resources
Mon December 7, 2019 1:30pm-2:30pm BMC/BCC Building 68 68-181 Single Cell RNASeq and copy number analyses
Mon January 20, 2019 1:30pm-3:00pm Duanduan Ma Building 68 68-181 Introduction of machine learning and its application to genomics


             How to install software packages by yourself on computing clusters
                                 Tuesday, August 27, 2019
                                        2:30-3:30 PM
                                           76-659

We will introduce how to install software packages on the Linux computing clusters (Luria and Rous) offered by the BioMicro Center/KI Bioinformatics and Computing core facility. The topics will include tips of Python, R and Perl package installations. We will also cover the basics of the module system and how to create modules for your own software applications. You are welcome to bring your own package to class for installation.

Please contact Duan Ma (duan@mit.edu) to sign up. Registration will close at 5pm on Friday, August 23nd 2019.