BioMicroCenter:BioinfoClasses
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| DATE | TIME | Instructor | Location | Room | Topic |
|---|---|---|---|---|---|
| Mon May 11, 2015 | 2pm-3pm | Duanduan Ma | Building 76 | 76-156a&b | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Jun 15, 2015 | 1:30pm-3pm | Duanduan Ma | Building 68 | 68-374 | Follow Up Course of Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Jul 13, 2015 | 10am-11am | Charlie Whittaker | Building 76 | 76-156a&b | Introduction to Spotfire |
| Mon Aug 10, 2015 | 1:30pm-3pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Sep 14, 2015 | 1pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to Python |
| Mon Oct 19, 2015 | 1pm-4pm | Duanduan Ma | Building 68 | 68-674 | Introduction to Python |
| Mon Nov 9, 2015 | 1:30pm-3:30pm | Jie Wu and Vincent Butty | Building 68 | 68-181 | A Traveller's companion to RNA-Seq interpretation
QC slides[1] methods slides [2] |
| Mon Dec 14, 2015 | 2pm-4pm | Duanduan Ma | Building 68 | 68-474 | Introduction to UNIX and the KI/BioMicro computational resources |
| Thur Jan 7, 2016 | 1:30pm-4:30pm | Duanduan Ma | Building 32 | 32-124 | Quantitative Biology Workshop Outreach-Introduction to Python |
| Fri Jan 29, 2016 | 9:00am-11:00am | Charlie Whittaker and Duanduan Ma | Building 14N (DIRC) | 14N-132 | Visualizing and Accessing Genomic Data Using Publically Available Genome Browsers and Databases |
| Tue Feb 16, 2016 | 2:00am-3:00am | Sara Strandberg-Qlucore | Building 76 | 76-156B | Introduction to Qlucore software |
| Mon Mar 7, 2016 | 2pm-4pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon April 11, 2016 | 1pm-4pm | Duanduan Ma | Building 68 | 68-121 | Introduction to R |
| Mon May 2, 2016 | 1pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to R |
| Mon May 9, 2016 | 1pm-3pm | Qlucore | Building 14N(DIRC) | 14N-132 | Hands on training of Qlucore software |
| Mon June 6, 2016 | 2pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Jun 13, 2016 | 1pm-4pm | Duanduan Ma | Building 76 | 76-156A/B | Introduction to R |
| Mon July 11, 2016 | 1pm-4pm | Duanduan Ma | Building 56 | 56-602 | Introduction to R |
| Mon Aug 8, 2016 | 1pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to R |
| Mon Sep 12, 2016 | 2pm-4pm | Duanduan Ma | Building 76 | 76-459 | Introduction to UNIX and the KI/BioMicro computational resources |
| Tue Oct 18, 2016 | 1pm-3pm | Duanduan Ma | Building 68 | 68-274 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Nov 7, 2016 | 1:00pm-2:00pm | Jie Wu & Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 1 [3] |
| Mon Nov 14, 2016 | 1:00pm-2:00pm | Jie Wu & Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 2 [4] |
| Mon Dec 12, 2016 | 2pm-4pm | Duanduan Ma | Building 76 | 76-259 | Introduction to UNIX and the KI/BioMicro computational resources |
| Thurs Jan 19, 2017 | 1pm-3pm | Duanduan Ma | Building 68 | 68-274 | Introduction to UNIX and the KI/BioMicro computational resources |
| Fri Feb 3, 2017 | 12:00pm-2:00pm | Charlie Whittaker and Duanduan Ma | Building 14N (DIRC) | 14N-132 | Visualizing and Accessing Genomic Data Using Publically Available Genome Browsers and Databases |
| Mon Mar 13, 2017 | 2pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon April 24, 2017 | 1pm-4pm | Duanduan Ma | Building 68 | 68-574 | Introduction to Python |
| Mon May 1, 2017 | 1pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to Python |
| Mon June 5, 2017 | 1pm-4pm | Duanduan Ma | Building 68 | 68-121 | Introduction to Python |
| Mon July 10, 2017 | 1pm-4pm | Duanduan Ma | Building 76 | 76-559 | Introduction to Python |
| Mon Aug 28, 2017 | 2pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Sep 25, 2017 | 2:00pm-3:00pm | Vincent Butty | Building 68 | 68-181 | RNA-Seq Experimental design + QC ; Slides [5] |
| Mon Oct 2, 2017 | 1:00pm-2:00pm | Vincent Butty | Building 68 | 68-181 | RNA-Seq analysis ; Slides [6] |
| Mon Nov 13, 2017 | 2pm-4pm | Duanduan Ma | Building 76 | 76-259 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Dec 11, 2017 | 1pm-4pm | Duanduan Ma | Building 56 | 56-602 | Introduction to R |
| Wed Jan 31, 2018 | 10am-12pm | Charlie Whittaker | Building 14N (DIRC) | 14N-132 | Gene Set Enrichment Analysis |
| Mon Feb 12, 2018 | 1pm-4pm | Duanduan Ma | Building 76 | 76-459 | Introduction to R |
| Mon Mar 12, 2018 | 2pm-4pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Apr 23, 2018 | 1:30pm-2:30pm | Duanduan Ma | Building 68 | 68-181 | Introduction to Biopython |
| Mon May 14, 2018 | 2:30pm-3:30pm | Duanduan Ma | Building 76 | 76-259 | Introduction to Biopython |
| Mon June 11, 2018 | 2:00pm-4:00pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resourceso Biopython |
| Mon July 16, 2018 | 2:30pm-4:00pm | Duanduan Ma | Building 68 | 68-121 | Introduction of Python to biologists session 1 |
| Mon August 13, 2018 | 2:30pm-4:00pm | Duanduan Ma | Building 76 | 76-559 | Introduction of Python to biologists session 2 |
| Mon September 10, 2018 | 2:00pm-4:00pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resources |
| Tue October 23, 2018 | 1:30pm-2:30pm | Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 1 - Slides [7] |
| Mon November 5, 2018 | 1pm-2pm | Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 2 - Slides [8] |
| Mon December 10, 2018 | 2:00pm-4:00pm | Duanduan Ma | Building 76 | 76-259 | Introduction to UNIX and the KI/BioMicro computational resources |
| Thursday Jan 31, 2019 | 10am-12pm | Charlie Whittaker | Building 14N (DIRC) | 14N-132 | Gene Set Enrichment Analysis |
| Mon February 11, 2019 | 2:30pm-4:00pm | Duanduan Ma | Building 68 | 68-674 | Introduction of Python to biologists session 1 |
| Mon March 11, 2019 | 2:30pm-4:30pm | Duanduan Ma | Building 76 | 76-259 | Introduction of Python to biologists session 2 |
| Mon April 8, 2019 | 2:00pm-4:00pm | Duanduan Ma | Building 68 | 68-180 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon May 13, 2019 | 2pm-4pm | Duanduan Ma | Building 68 | 68-121 | Introduction to R session 1 |
| Mon June 10, 2019 | 2pm-4pm | Duanduan Ma | Building 76 | 76-659 | Introduction to R session 2 |
| Mon July 8, 2019 | 2:00pm-4:00pm | Duanduan Ma | Building 68 | 68-574 | Introduction to UNIX and the KI/BioMicro computational resources |
| Tue August 27, 2019 | 2:30pm-3:30pm | Jingzhi Zhu & Duanduan Ma | Building 76 | 76-659 | How to install software packages yourself on computing clusters |
| Mon September 30, 2019 | 1:30pm-2:30pm | Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 1 |
| Mon October 7, 2019 | 1:30pm-2:30pm | Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 2 |
| Mon November 11, 2019 | 2:00pm-4:00pm | Duanduan Ma | Building 76 | 76-259 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon December 7, 2019 | 1:30pm-2:30pm | BMC/BCC | Building 68 | 68-181 | Single Cell RNASeq and copy number analyses |
| Mon January 20, 2019 | 1:30pm-3:00pm | Duanduan Ma | Building 68 | 68-181 | Introduction of machine learning and its application to genomics |
How to install software packages by yourself on computing clusters
Tuesday, August 27, 2019
2:30-3:30 PM
76-659
We will introduce how to install software packages on the Linux computing clusters (Luria and Rous) offered by the BioMicro Center/KI Bioinformatics and Computing core facility. The topics will include tips of Python, R and Perl package installations. We will also cover the basics of the module system and how to create modules for your own software applications. You are welcome to bring your own package to class for installation.
Please contact Duan Ma (duan@mit.edu) to sign up. Registration will close at 5pm on Friday, August 23nd 2019.
