BioMicroCenter:BioinfoClasses
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Teaching Schedule
| DATE | TIME | Instructor | Location | Room | Topic |
|---|---|---|---|---|---|
| Mon May 11, 2015 | 2pm-3pm | Duanduan Ma | Building 76 | 76-156a&b | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Jun 15, 2015 | 1:30pm-3pm | Duanduan Ma | Building 68 | 68-374 | Follow Up Course of Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Jul 13, 2015 | 10am-11am | Charlie Whittaker | Building 76 | 76-156a&b | Introduction to Spotfire |
| Mon Aug 10, 2015 | 1:30pm-3pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Sep 14, 2015 | 1pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to Python |
| Mon Oct 19, 2015 | 1pm-4pm | Duanduan Ma | Building 68 | 68-674 | Introduction to Python |
| Mon Nov 9, 2015 | 1:30pm-3:30pm | Jie Wu and Vincent Butty | Building 68 | 68-181 | A Traveller's companion to RNA-Seq interpretation
QC slides[1] methods slides [2] |
| Mon Dec 14, 2015 | 2pm-4pm | Duanduan Ma | Building 68 | 68-474 | Introduction to UNIX and the KI/BioMicro computational resources |
| Thur Jan 7, 2016 | 1:30pm-4:30pm | Duanduan Ma | Building 32 | 32-124 | Quantitative Biology Workshop Outreach-Introduction to Python |
| Fri Jan 29, 2016 | 9:00am-11:00am | Charlie Whittaker and Duanduan Ma | Building 14N (DIRC) | 14N-132 | Visualizing and Accessing Genomic Data Using Publically Available Genome Browsers and Databases |
| Tue Feb 16, 2016 | 2:00am-3:00am | Sara Strandberg-Qlucore | Building 76 | 76-156B | Introduction to Qlucore software |
| Mon Mar 7, 2016 | 2pm-4pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon April 11, 2016 | 1pm-4pm | Duanduan Ma | Building 68 | 68-121 | Introduction to R |
| Mon May 2, 2016 | 1pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to R |
| Mon May 9, 2016 | 1pm-3pm | Qlucore | Building 14N(DIRC) | 14N-132 | Hands on training of Qlucore software |
| Mon June 6, 2016 | 2pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Jun 13, 2016 | 1pm-4pm | Duanduan Ma | Building 76 | 76-156A/B | Introduction to R |
| Mon July 11, 2016 | 1pm-4pm | Duanduan Ma | Building 56 | 56-602 | Introduction to R |
| Mon Aug 8, 2016 | 1pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to R |
| Mon Sep 12, 2016 | 2pm-4pm | Duanduan Ma | Building 76 | 76-459 | Introduction to UNIX and the KI/BioMicro computational resources |
| Tue Oct 18, 2016 | 1pm-3pm | Duanduan Ma | Building 68 | 68-274 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Nov 7, 2016 | 1:00pm-2:00pm | Jie Wu & Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 1 [3] |
| Mon Nov 14, 2016 | 1:00pm-2:00pm | Jie Wu & Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 2 [4] |
| Mon Dec 12, 2016 | 2pm-4pm | Duanduan Ma | Building 76 | 76-259 | Introduction to UNIX and the KI/BioMicro computational resources |
| Thurs Jan 19, 2017 | 1pm-3pm | Duanduan Ma | Building 68 | 68-274 | Introduction to UNIX and the KI/BioMicro computational resources |
| Fri Feb 3, 2017 | 12:00pm-2:00pm | Charlie Whittaker and Duanduan Ma | Building 14N (DIRC) | 14N-132 | Visualizing and Accessing Genomic Data Using Publically Available Genome Browsers and Databases |
| Mon Mar 13, 2017 | 2pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon April 24, 2017 | 1pm-4pm | Duanduan Ma | Building 68 | 68-574 | Introduction to Python |
| Mon May 1, 2017 | 1pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to Python |
| Mon June 5, 2017 | 1pm-4pm | Duanduan Ma | Building 68 | 68-121 | Introduction to Python |
| Mon July 10, 2017 | 1pm-4pm | Duanduan Ma | Building 76 | 76-559 | Introduction to Python |
| Mon Aug 28, 2017 | 2pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Sep 25, 2017 | 2:00pm-3:00pm | Vincent Butty | Building 68 | 68-181 | RNA-Seq Experimental design + QC ; Slides [5] |
| Mon Oct 2, 2017 | 1:00pm-2:00pm | Vincent Butty | Building 68 | 68-181 | RNA-Seq analysis ; Slides [6] |
| Mon Nov 13, 2017 | 2pm-4pm | Duanduan Ma | Building 76 | 76-259 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Dec 11, 2017 | 1pm-4pm | Duanduan Ma | Building 56 | 56-602 | Introduction to R |
| Wed Jan 31, 2018 | 10am-12pm | Charlie Whittaker | Building 14N (DIRC) | 14N-132 | Gene Set Enrichment Analysis |
| Mon Feb 12, 2018 | 1pm-4pm | Duanduan Ma | Building 76 | 76-459 | Introduction to R |
| Mon Mar 12, 2018 | 2pm-4pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Apr 23, 2018 | 1:30pm-2:30pm | Duanduan Ma | Building 68 | 68-181 | Introduction to Biopython |
| Mon May 14, 2018 | 2:30pm-3:30pm | Duanduan Ma | Building 76 | 76-259 | Introduction to Biopython |
| Mon June 11, 2018 | 2:00pm-4:00pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resourceso Biopython |
| Mon July 16, 2018 | 2:30pm-4:00pm | Duanduan Ma | Building 68 | 68-121 | Introduction of Python to biologists session 1 |
| Mon August 13, 2018 | 2:30pm-4:00pm | Duanduan Ma | Building 76 | 76-559 | Introduction of Python to biologists session 2 |
| Mon September 10, 2018 | 2:00pm-4:00pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resources |
| Tue October 23, 2018 | 1:30pm-2:30pm | Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 1 - Slides [7] |
| Mon November 5, 2018 | 1pm-2pm | Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 2 - Slides [8] |
| Mon December 10, 2018 | 2:00pm-4:00pm | Duanduan Ma | Building 76 | 76-259 | Introduction to UNIX and the KI/BioMicro computational resources |
| Thursday Jan 31, 2019 | 10am-12pm | Charlie Whittaker | Building 14N (DIRC) | 14N-132 | Gene Set Enrichment Analysis |
| Mon February 11, 2019 | 2:30pm-4:00pm | Duanduan Ma | Building 68 | 68-674 | Introduction of Python to biologists session 1 |
| Mon March 11, 2019 | 2:30pm-4:30pm | Duanduan Ma | Building 76 | 76-259 | Introduction of Python to biologists session 2 |
| Mon April 8, 2019 | 2:00pm-4:00pm | Duanduan Ma | Building 68 | 68-180 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon May 13, 2019 | 2pm-4pm | Duanduan Ma | Building 68 | 68-121 | Introduction to R session 1 |
| Mon June 10, 2019 | 2pm-4pm | Duanduan Ma | Building 76 | 76-659 | Introduction to R session 2 |
| Mon July 8, 2019 | 2:00pm-4:00pm | Duanduan Ma | Building 68 | 68-574 | Introduction to UNIX and the KI/BioMicro computational resources |
| Tue August 27, 2019 | 2:30pm-3:30pm | Jingzhi Zhu & Duanduan Ma | Building 76 | 76-659 | How to install software packages yourself on computing clusters |
| Wed September 25, 2019 | 1:00pm-2:00pm | Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 1 - Slides [9] |
| Wed October 2, 2019 | 1:00pm-2:00pm | Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 2 - Slides [10] |
| Mon November 18, 2019 | 2:00pm-4:00pm | Duanduan Ma | Building 76 | 76-659 | Introduction to UNIX and the KI/BioMicro computational resources |
| Tues December 10, 2019 | 1:00pm-2:00pm | BMC/IGB core (Vincent Butty) | Building 68 | 68-181 | Single Cell RNA-Seq Slides: [11] |
| Mon January 31, 2020 | 2:00pm-3:30pm | Duanduan Ma | Building 76 | 76-659 | Introduction of machine learning and its applications in biology |
| Mon February 10, 2020 | 2:00pm-4:30pm | Duanduan Ma | Building 76 | 76-659 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon March 9, 2020 | 2:30pm-4:00pm | Duanduan Ma | Building 76 | 76-659 | Introduction of Python to biologists session 1 |
| Mon April 17, 2020 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to UNIX and the KI/BioMicro computational resources |
| Fri May 8, 2020 | 1:00pm-3:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to R session 1 |
| Wed May 13, 2020 | 1:00pm-3:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to R session 2 |
| Fri May 27, 2020 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Introduction of Python to biologists session 2 |
| Fri June 5, 2020 | 2:00pm-4:00pm | Duanduan Ma | Zoom | Zoom link | Introduction of Python to biologists session 1 |
| Mon June 8, 2020 | 2:00pm-4:00pm | Duanduan Ma | Zoom | Zoom link | Introduction of Python to biologists session 2 |
| Mon June 15, 2020 | 2:00pm-4:00pm | Duanduan Ma | Zoom | Zoom link | Introduction to Biopython |
| Mon July 20, 2020 | 2:00pm-4:00pm | Duanduan Ma | Zoom | Zoom link | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon September 14, 2020 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Introduction of machine learning and its applications in biology session I |
| Mon September 21, 2020 | 2:00pm-4:30pm | Duanduan Ma and Huiming Ding | Zoom | Zoom link | Introduction of machine learning and its applications in biology session II |
| Mon October 19, 2020 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon October 26, 2020 | 2:00pm-4:30pm | Jingzhi Zhu | Zoom | Zoom link | How to install software packages yourself on computing clusters |
| Mon November 9, 2020 | 2:00pm-4:30pm | Dikshant Pradhan | Zoom | Zoom link | Public Data Repositories |
| Wed December 9, 2020 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to R session 1 |
| Wed December 16, 2020 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to R session 2 |
| Tuesday February 16, 2021 | 2pm-4:30pm | Duanduan Ma | zoom | zoom link | Introduction to UNIX and the KI/BioMicro computational resources session I |
| Monday February 22, 2021 | 2pm-4:30pm | Jingzhi Zhu, Duanduan Ma | zoom | zoom link | Introduction to UNIX and the KI/BioMicro computational resources session II |
| Monday March 15, 2021 | 2pm-4:30pm | Duanduan Ma | zoom | zoom link | Introduction of Python to biologists session I |
| Monday March 22, 2021 | 2pm-4:30pm | Duanduan Ma | zoom | zoom link | Introduction of Python to biologists session II |
| Monday March 29, 2021 | 2pm-4:30pm | Duanduan Ma | zoom | zoom link | Introduction to Biopython |
| Monday April 12, 2021 | 2pm-3pm | Vincent Butty | zoom | zoom link | A Traveler's companion to RNA-Seq interpretation session I |
| Monday April 26, 2021 | 2pm-3pm | Vincent Butty | zoom | zoom link | A Traveler's companion to RNA-Seq interpretation session II |
| Monday May 3, 2021 | 2pm-3pm | Vincent Butty | zoom | zoom link | Single Cell RNA-seq |
| Monday May 10, 2021 | 2pm-4:30pm | Duanduan Ma | zoom | zoom link | Introduction to UNIX and the KI/BioMicro computational resources session I |
| Monday May 17, 2021 | 2pm-4:30pm | Jingzhi Zhu, Duanduan Ma | zoom | zoom link | Introduction to UNIX and the KI/BioMicro computational resources session II |
| Monday June 7, 2021 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to R session 1 |
| Monday June 14, 2021 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to R session 2 |
| Monday September 13, 2021 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to UNIX and the KI/BioMicro computational resources |
| Monday September 20, 2021 | 2:00pm-4:30pm | Jingzhi Zhu | Zoom | Zoom link | Effective utilization of IGB computational resources - SLURM & CONDA |
| Monday October 11, 2021 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to Python session I |
| Monday October 18, 2021 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to Python session II |
| Monday October 25, 2021 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to Biopython |
| Monday November 1, 2021 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Data processing and visualization using Python: Introduction to Pandas |
| Monday November 8, 2021 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Data processing and visualization using Python: Introduction to Matplotlib |
| Monday November 15, 2021 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Data processing and visualization using Python: Introduction to Seaborn |
| Monday December 13, 2021 | 2:00pm-4:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to Linux and the IGB computational resources |
| Tuesday February 8, 2022 | 2:00pm-4:30pm | Jingzhi Zhu and Duanduan Ma | Zoom | Zoom link | Introduction to Linux and the KI/BioMicro computational resources |
| Thursday March 3rd, 2022 | 2:00pm-3:00pm | Dikshant Pradhan | Zoom | Zoom link | Public Data Repositories |
| Monday March 14th, 2022 | 1:00pm-3:30pm | Vincent Butty | Zoom | Zoom link | RNA-Seq Design and Analysis Session I |
| Tuesday March 15th, 2022 | 1:00pm-3:30pm | Vincent Butty | Zoom | Zoom link | RNA-Seq Design and Analysis Session II |
| Thursday March 17th, 2022 | 1:00pm-3:30pm | Vincent Butty | Zoom | Zoom link | RNA-Seq Design and Analysis Session III |
| Monday March 28, 2022 | 1:00pm-3:30pm | Duanduan Ma and Jingzhi Zhu | Zoom | Zoom link | Introduction to Linux and the KI/BioMicro computational resources |
| Monday April 11, 2022 | 1:00pm-3:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to R session 1 |
| Wednesday April 13, 2022 | 1:00pm-3:30pm | Duanduan Ma | Zoom | Zoom link | Introduction to R session 2 |
| Monday Apil 25th, 2022 | 1:00pm-3:30pm | Charlie Whittaker Dikshant Pradhan | Zoom | Zoom link | RNAseq HandsOn session 1 |
| Wednesday Apil 27th, 2022 | 1:00pm-3:30pm | Charlie Whittaker Dikshant Pradhan | Zoom | Zoom link | RNAseq HandsOn session 2 |
| Friday Apil 27th, 2022 | 1:00pm-3:30pm | Charlie Whittaker Dikshant Pradhan | Zoom | Zoom link | RNAseq HandsOn session 3 |
Introduction to Linux and the KI/BioMicro computational resources
The Integrated Genomics and Bioinformatics core at MIT (IGB) is offering a hands-on introductory session: Introduction to Linux and the KI/BioMicro computational resources. The class will introduce basic Linux command line usage, KI/BioMicro computational resources, and the basics of cluster computing.
The class is scheduled for Tuesday February 8th 2022 from 1:00-3:30 PM
Registration is managed using iLabs, and there is a none-refundable nominal fee for the classes. To register for the course, please fill out this form:https://mit-ki.ilabsolutions.com/service_item/new/3189?spt_id=21294. For information on obtaining an ilabs account, see:https://ki.mit.edu/sbc/bioinformatics/access. MIT VPN is required to access course materials. If you have not yet accessed MIT VPN, please see attachment "How to configure a VPN to MITnetcloud”.
The zoom link will be distributed before class on Friday afternoon. If you do not receive class confirmation by Saturday, it means we have missed your registration. Please contact Duan Ma at duan@mit.edu to finish registration or for questions.