BioMicroCenter:BioinfoClasses

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Teaching Schedule

DATE TIME Instructor Location Room Topic
Mon May 11, 2015 2pm-3pm Duanduan Ma Building 76 76-156a&b Introduction to UNIX and the KI/BioMicro computational resources
Mon Jun 15, 2015 1:30pm-3pm Duanduan Ma Building 68 68-374 Follow Up Course of Introduction to UNIX and the KI/BioMicro computational resources
Mon Jul 13, 2015 10am-11am Charlie Whittaker Building 76 76-156a&b Introduction to Spotfire
Mon Aug 10, 2015 1:30pm-3pm Duanduan Ma Building 56 56-602 Introduction to UNIX and the KI/BioMicro computational resources
Mon Sep 14, 2015 1pm-4pm Duanduan Ma Building 68 68-374 Introduction to Python
Mon Oct 19, 2015 1pm-4pm Duanduan Ma Building 68 68-674 Introduction to Python
Mon Nov 9, 2015 1:30pm-3:30pm Jie Wu and Vincent Butty Building 68 68-181 A Traveller's companion to RNA-Seq interpretation
 QC slides[1] methods slides [2]
Mon Dec 14, 2015 2pm-4pm Duanduan Ma Building 68 68-474 Introduction to UNIX and the KI/BioMicro computational resources
Thur Jan 7, 2016 1:30pm-4:30pm Duanduan Ma Building 32 32-124 Quantitative Biology Workshop Outreach-Introduction to Python
Fri Jan 29, 2016 9:00am-11:00am Charlie Whittaker and Duanduan Ma Building 14N (DIRC) 14N-132 Visualizing and Accessing Genomic Data Using Publically Available Genome Browsers and Databases
Tue Feb 16, 2016 2:00am-3:00am Sara Strandberg-Qlucore Building 76 76-156B Introduction to Qlucore software
Mon Mar 7, 2016 2pm-4pm Duanduan Ma Building 56 56-602 Introduction to UNIX and the KI/BioMicro computational resources
Mon April 11, 2016 1pm-4pm Duanduan Ma Building 68 68-121 Introduction to R
Mon May 2, 2016 1pm-4pm Duanduan Ma Building 68 68-374 Introduction to R
Mon May 9, 2016 1pm-3pm Qlucore Building 14N(DIRC) 14N-132 Hands on training of Qlucore software
Mon June 6, 2016 2pm-4pm Duanduan Ma Building 68 68-374 Introduction to UNIX and the KI/BioMicro computational resources
Mon Jun 13, 2016 1pm-4pm Duanduan Ma Building 76 76-156A/B Introduction to R
Mon July 11, 2016 1pm-4pm Duanduan Ma Building 56 56-602 Introduction to R
Mon Aug 8, 2016 1pm-4pm Duanduan Ma Building 68 68-374 Introduction to R
Mon Sep 12, 2016 2pm-4pm Duanduan Ma Building 76 76-459 Introduction to UNIX and the KI/BioMicro computational resources
Tue Oct 18, 2016 1pm-3pm Duanduan Ma Building 68 68-274 Introduction to UNIX and the KI/BioMicro computational resources
Mon Nov 7, 2016 1:00pm-2:00pm Jie Wu & Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 1 [3]
Mon Nov 14, 2016 1:00pm-2:00pm Jie Wu & Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 2 [4]
Mon Dec 12, 2016 2pm-4pm Duanduan Ma Building 76 76-259 Introduction to UNIX and the KI/BioMicro computational resources
Thurs Jan 19, 2017 1pm-3pm Duanduan Ma Building 68 68-274 Introduction to UNIX and the KI/BioMicro computational resources
Fri Feb 3, 2017 12:00pm-2:00pm Charlie Whittaker and Duanduan Ma Building 14N (DIRC) 14N-132 Visualizing and Accessing Genomic Data Using Publically Available Genome Browsers and Databases
Mon Mar 13, 2017 2pm-4pm Duanduan Ma Building 68 68-374 Introduction to UNIX and the KI/BioMicro computational resources
Mon April 24, 2017 1pm-4pm Duanduan Ma Building 68 68-574 Introduction to Python
Mon May 1, 2017 1pm-4pm Duanduan Ma Building 68 68-374 Introduction to Python
Mon June 5, 2017 1pm-4pm Duanduan Ma Building 68 68-121 Introduction to Python
Mon July 10, 2017 1pm-4pm Duanduan Ma Building 76 76-559 Introduction to Python
Mon Aug 28, 2017 2pm-4pm Duanduan Ma Building 68 68-374 Introduction to UNIX and the KI/BioMicro computational resources
Mon Sep 25, 2017 2:00pm-3:00pm Vincent Butty Building 68 68-181 RNA-Seq Experimental design + QC ; Slides [5]
Mon Oct 2, 2017 1:00pm-2:00pm Vincent Butty Building 68 68-181 RNA-Seq analysis ; Slides [6]
Mon Nov 13, 2017 2pm-4pm Duanduan Ma Building 76 76-259 Introduction to UNIX and the KI/BioMicro computational resources
Mon Dec 11, 2017 1pm-4pm Duanduan Ma Building 56 56-602 Introduction to R
Wed Jan 31, 2018 10am-12pm Charlie Whittaker Building 14N (DIRC) 14N-132 Gene Set Enrichment Analysis
Mon Feb 12, 2018 1pm-4pm Duanduan Ma Building 76 76-459 Introduction to R
Mon Mar 12, 2018 2pm-4pm Duanduan Ma Building 56 56-602 Introduction to UNIX and the KI/BioMicro computational resources
Mon Apr 23, 2018 1:30pm-2:30pm Duanduan Ma Building 68 68-181 Introduction to Biopython
Mon May 14, 2018 2:30pm-3:30pm Duanduan Ma Building 76 76-259 Introduction to Biopython
Mon June 11, 2018 2:00pm-4:00pm Duanduan Ma Building 56 56-602 Introduction to UNIX and the KI/BioMicro computational resourceso Biopython
Mon July 16, 2018 2:30pm-4:00pm Duanduan Ma Building 68 68-121 Introduction of Python to biologists session 1
Mon August 13, 2018 2:30pm-4:00pm Duanduan Ma Building 76 76-559 Introduction of Python to biologists session 2
Mon September 10, 2018 2:00pm-4:00pm Duanduan Ma Building 56 56-602 Introduction to UNIX and the KI/BioMicro computational resources
Tue October 23, 2018 1:30pm-2:30pm Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 1 - Slides [7]
Mon November 5, 2018 1pm-2pm Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 2 - Slides [8]
Mon December 10, 2018 2:00pm-4:00pm Duanduan Ma Building 76 76-259 Introduction to UNIX and the KI/BioMicro computational resources
Thursday Jan 31, 2019 10am-12pm Charlie Whittaker Building 14N (DIRC) 14N-132 Gene Set Enrichment Analysis
Mon February 11, 2019 2:30pm-4:00pm Duanduan Ma Building 68 68-674 Introduction of Python to biologists session 1
Mon March 11, 2019 2:30pm-4:30pm Duanduan Ma Building 76 76-259 Introduction of Python to biologists session 2
Mon April 8, 2019 2:00pm-4:00pm Duanduan Ma Building 68 68-180 Introduction to UNIX and the KI/BioMicro computational resources
Mon May 13, 2019 2pm-4pm Duanduan Ma Building 68 68-121 Introduction to R session 1
Mon June 10, 2019 2pm-4pm Duanduan Ma Building 76 76-659 Introduction to R session 2
Mon July 8, 2019 2:00pm-4:00pm Duanduan Ma Building 68 68-574 Introduction to UNIX and the KI/BioMicro computational resources
Tue August 27, 2019 2:30pm-3:30pm Jingzhi Zhu & Duanduan Ma Building 76 76-659 How to install software packages yourself on computing clusters
Wed September 25, 2019 1:00pm-2:00pm Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 1 - Slides [9]
Wed October 2, 2019 1:00pm-2:00pm Vincent Butty Building 68 68-181 A Traveler's companion to RNA-Seq interpretation session 2 - Slides [10]
Mon November 18, 2019 2:00pm-4:00pm Duanduan Ma Building 76 76-659 Introduction to UNIX and the KI/BioMicro computational resources
Tues December 10, 2019 1:00pm-2:00pm BMC/IGB core (Vincent Butty) Building 68 68-181 Single Cell RNA-Seq Slides: [11]
Mon January 31, 2020 2:00pm-3:30pm Duanduan Ma Building 76 76-659 Introduction of machine learning and its applications in biology
Mon February 10, 2020 2:00pm-4:30pm Duanduan Ma Building 76 76-659 Introduction to UNIX and the KI/BioMicro computational resources
Mon March 9, 2020 2:30pm-4:00pm Duanduan Ma Building 76 76-659 Introduction of Python to biologists session 1
Mon April 17, 2020 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Introduction to UNIX and the KI/BioMicro computational resources
Fri May 8, 2020 1:00pm-3:30pm Duanduan Ma Zoom Zoom link Introduction to R session 1
Wed May 13, 2020 1:00pm-3:30pm Duanduan Ma Zoom Zoom link Introduction to R session 2
Fri May 27, 2020 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Introduction of Python to biologists session 2
Fri June 5, 2020 2:00pm-4:00pm Duanduan Ma Zoom Zoom link Introduction of Python to biologists session 1
Mon June 8, 2020 2:00pm-4:00pm Duanduan Ma Zoom Zoom link Introduction of Python to biologists session 2
Mon June 15, 2020 2:00pm-4:00pm Duanduan Ma Zoom Zoom link Introduction to Biopython
Mon July 20, 2020 2:00pm-4:00pm Duanduan Ma Zoom Zoom link Introduction to UNIX and the KI/BioMicro computational resources
Mon September 14, 2020 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Introduction of machine learning and its applications in biology session I
Mon September 21, 2020 2:00pm-4:30pm Duanduan Ma and Huiming Ding Zoom Zoom link Introduction of machine learning and its applications in biology session II
Mon October 19, 2020 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Introduction to UNIX and the KI/BioMicro computational resources
Mon October 26, 2020 2:00pm-4:30pm Jingzhi Zhu Zoom Zoom link How to install software packages yourself on computing clusters
Mon November 9, 2020 2:00pm-4:30pm Dikshant Pradhan Zoom Zoom link Public Data Repositories
Wed December 9, 2020 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Introduction to R session 1
Wed December 16, 2020 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Introduction to R session 2
Tuesday February 16, 2021 2pm-4:30pm Duanduan Ma zoom zoom link Introduction to UNIX and the KI/BioMicro computational resources session I
Monday February 22, 2021 2pm-4:30pm Jingzhi Zhu, Duanduan Ma zoom zoom link Introduction to UNIX and the KI/BioMicro computational resources session II
Monday March 15, 2021 2pm-4:30pm Duanduan Ma zoom zoom link Introduction of Python to biologists session I
Monday March 22, 2021 2pm-4:30pm Duanduan Ma zoom zoom link Introduction of Python to biologists session II
Monday March 29, 2021 2pm-4:30pm Duanduan Ma zoom zoom link Introduction to Biopython
Monday April 12, 2021 2pm-3pm Vincent Butty zoom zoom link A Traveler's companion to RNA-Seq interpretation session I
Monday April 26, 2021 2pm-3pm Vincent Butty zoom zoom link A Traveler's companion to RNA-Seq interpretation session II
Monday May 3, 2021 2pm-3pm Vincent Butty zoom zoom link Single Cell RNA-seq
Monday May 10, 2021 2pm-4:30pm Duanduan Ma zoom zoom link Introduction to UNIX and the KI/BioMicro computational resources session I
Monday May 17, 2021 2pm-4:30pm Jingzhi Zhu, Duanduan Ma zoom zoom link Introduction to UNIX and the KI/BioMicro computational resources session II
Monday June 7, 2021 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Introduction to R session 1
Monday June 14, 2021 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Introduction to R session 2
Monday September 13, 2021 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Introduction to UNIX and the KI/BioMicro computational resources
Monday September 20, 2021 2:00pm-4:30pm Jingzhi Zhu Zoom Zoom link Effective utilization of IGB computational resources - SLURM & CONDA
Monday October 11, 2021 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Introduction to Python session I
Monday October 18, 2021 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Introduction to Python session II
Monday October 25, 2021 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Introduction to Biopython
Monday November 1, 2021 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Data processing and visualization using Python: Introduction to Pandas
Monday November 8, 2021 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Data processing and visualization using Python: Introduction to Matplotlib
Monday November 15, 2021 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Data processing and visualization using Python: Introduction to Seaborn
Monday December 13, 2021 2:00pm-4:30pm Duanduan Ma Zoom Zoom link Introduction to Linux and the IGB computational resources
Tuesday February 8, 2022 2:00pm-4:30pm Jingzhi Zhu and Duanduan Ma Zoom Zoom link Introduction to Linux and the KI/BioMicro computational resources
Thursday March 3rd, 2022 2:00pm-3:00pm Dikshant Pradhan Zoom Zoom link Public Data Repositories
Monday March 14th, 2022 1:00pm-3:30pm Vincent Butty Zoom Zoom link RNA-Seq Design and Analysis Session I
Tuesday March 15th, 2022 1:00pm-3:30pm Vincent Butty Zoom Zoom link RNA-Seq Design and Analysis Session II
Thursday March 17th, 2022 1:00pm-3:30pm Vincent Butty Zoom Zoom link RNA-Seq Design and Analysis Session III
Monday March 28, 2022 1:00pm-3:30pm Duanduan Ma and Jingzhi Zhu Zoom Zoom link Introduction to Linux and the KI/BioMicro computational resources
Monday April 11, 2022 1:00pm-3:30pm Duanduan Ma Zoom Zoom link Introduction to R session 1
Wednesday April 13, 2022 1:00pm-3:30pm Duanduan Ma Zoom Zoom link Introduction to R session 2
Monday Apil 25th, 2022 1:00pm-3:30pm Charlie Whittaker Dikshant Pradhan Zoom Zoom link RNAseq HandsOn session 1
Wednesday Apil 27th, 2022 1:00pm-3:30pm Charlie Whittaker Dikshant Pradhan Zoom Zoom link RNAseq HandsOn session 2
Friday Apil 27th, 2022 1:00pm-3:30pm Charlie Whittaker Dikshant Pradhan Zoom Zoom link RNAseq HandsOn session 3


Introduction to Linux and the KI/BioMicro computational resources


The Integrated Genomics and Bioinformatics core at MIT (IGB) is offering a hands-on introductory session: Introduction to Linux and the KI/BioMicro computational resources. The class will introduce basic Linux command line usage, KI/BioMicro computational resources, and the basics of cluster computing.


The class is scheduled for Tuesday February 8th 2022 from 1:00-3:30 PM


Registration is managed using iLabs, and there is a none-refundable nominal fee for the classes. To register for the course, please fill out this form:https://mit-ki.ilabsolutions.com/service_item/new/3189?spt_id=21294. For information on obtaining an ilabs account, see:https://ki.mit.edu/sbc/bioinformatics/access. MIT VPN is required to access course materials. If you have not yet accessed MIT VPN, please see attachment "How to configure a VPN to MITnetcloud”.


The zoom link will be distributed before class on Friday afternoon. If you do not receive class confirmation by Saturday, it means we have missed your registration. Please contact Duan Ma at duan@mit.edu to finish registration or for questions.