BioMicroCenter:BioinfoClasses
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| DATE | TIME | Instructor | Location | Room | Topic |
|---|---|---|---|---|---|
| Mon May 11, 2015 | 2pm-3pm | Duanduan Ma | Building 76 | 76-156a&b | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Jun 15, 2015 | 1:30pm-3pm | Duanduan Ma | Building 68 | 68-374 | Follow Up Course of Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Jul 13, 2015 | 10am-11am | Charlie Whittaker | Building 76 | 76-156a&b | Introduction to Spotfire |
| Mon Aug 10, 2015 | 1:30pm-3pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Sep 14, 2015 | 1pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to Python |
| Mon Oct 19, 2015 | 1pm-4pm | Duanduan Ma | Building 68 | 68-674 | Introduction to Python |
| Mon Nov 9, 2015 | 1:30pm-3:30pm | Jie Wu and Vincent Butty | Building 68 | 68-181 | A Traveller's companion to RNA-Seq interpretation
QC slides[1] methods slides [2] |
| Mon Dec 14, 2015 | 2pm-4pm | Duanduan Ma | Building 68 | 68-474 | Introduction to UNIX and the KI/BioMicro computational resources |
| Thur Jan 7, 2016 | 1:30pm-4:30pm | Duanduan Ma | Building 32 | 32-124 | Quantitative Biology Workshop Outreach-Introduction to Python |
| Fri Jan 29, 2016 | 9:00am-11:00am | Charlie Whittaker and Duanduan Ma | Building 14N (DIRC) | 14N-132 | Visualizing and Accessing Genomic Data Using Publically Available Genome Browsers and Databases |
| Tue Feb 16, 2016 | 2:00am-3:00am | Sara Strandberg-Qlucore | Building 76 | 76-156B | Introduction to Qlucore software |
| Mon Mar 7, 2016 | 2pm-4pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon April 11, 2016 | 1pm-4pm | Duanduan Ma | Building 68 | 68-121 | Introduction to R |
| Mon May 2, 2016 | 1pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to R |
| Mon May 9, 2016 | 1pm-3pm | Qlucore | Building 14N(DIRC) | 14N-132 | Hands on training of Qlucore software |
| Mon June 6, 2016 | 2pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Jun 13, 2016 | 1pm-4pm | Duanduan Ma | Building 76 | 76-156A/B | Introduction to R |
| Mon July 11, 2016 | 1pm-4pm | Duanduan Ma | Building 56 | 56-602 | Introduction to R |
| Mon Aug 8, 2016 | 1pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to R |
| Mon Sep 12, 2016 | 2pm-4pm | Duanduan Ma | Building 76 | 76-459 | Introduction to UNIX and the KI/BioMicro computational resources |
| Tue Oct 18, 2016 | 1pm-3pm | Duanduan Ma | Building 68 | 68-274 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Nov 7, 2016 | 1:00pm-2:00pm | Jie Wu & Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 1 [3] |
| Mon Nov 14, 2016 | 1:00pm-2:00pm | Jie Wu & Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 2 [4] |
| Mon Dec 12, 2016 | 2pm-4pm | Duanduan Ma | Building 76 | 76-259 | Introduction to UNIX and the KI/BioMicro computational resources |
| Thurs Jan 19, 2017 | 1pm-3pm | Duanduan Ma | Building 68 | 68-274 | Introduction to UNIX and the KI/BioMicro computational resources |
| Fri Feb 3, 2017 | 12:00pm-2:00pm | Charlie Whittaker and Duanduan Ma | Building 14N (DIRC) | 14N-132 | Visualizing and Accessing Genomic Data Using Publically Available Genome Browsers and Databases |
| Mon Mar 13, 2017 | 2pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon April 24, 2017 | 1pm-4pm | Duanduan Ma | Building 68 | 68-574 | Introduction to Python |
| Mon May 1, 2017 | 1pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to Python |
| Mon June 5, 2017 | 1pm-4pm | Duanduan Ma | Building 68 | 68-121 | Introduction to Python |
| Mon July 10, 2017 | 1pm-4pm | Duanduan Ma | Building 76 | 76-559 | Introduction to Python |
| Mon Aug 28, 2017 | 2pm-4pm | Duanduan Ma | Building 68 | 68-374 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Sep 25, 2017 | 2:00pm-3:00pm | Vincent Butty | Building 68 | 68-181 | RNA-Seq Experimental design + QC ; Slides [5] |
| Mon Oct 2, 2017 | 1:00pm-2:00pm | Vincent Butty | Building 68 | 68-181 | RNA-Seq analysis ; Slides [6] |
| Mon Nov 13, 2017 | 2pm-4pm | Duanduan Ma | Building 76 | 76-259 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Dec 11, 2017 | 1pm-4pm | Duanduan Ma | Building 56 | 56-602 | Introduction to R |
| Wed Jan 31, 2018 | 10am-12pm | Charlie Whittaker | Building 14N (DIRC) | 14N-132 | Gene Set Enrichment Analysis |
| Mon Feb 12, 2018 | 1pm-4pm | Duanduan Ma | Building 76 | 76-459 | Introduction to R |
| Mon Mar 12, 2018 | 2pm-4pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon Apr 23, 2018 | 1:30pm-2:30pm | Duanduan Ma | Building 68 | 68-181 | Introduction to Biopython |
| Mon May 14, 2018 | 2:30pm-3:30pm | Duanduan Ma | Building 76 | 76-259 | Introduction to Biopython |
| Mon June 11, 2018 | 2:00pm-4:00pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resourceso Biopython |
| Mon July 16, 2018 | 2:30pm-4:00pm | Duanduan Ma | Building 68 | 68-121 | Introduction of Python to biologists session 1 |
| Mon August 13, 2018 | 2:30pm-4:00pm | Duanduan Ma | Building 76 | 76-559 | Introduction of Python to biologists session 2 |
| Mon September 10, 2018 | 2:00pm-4:00pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resources |
| Tue October 23, 2018 | 1:30pm-2:30pm | Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 1 - Slides [7] |
| Mon November 5, 2018 | 1pm-2pm | Vincent Butty | Building 68 | 68-181 | A Traveler's companion to RNA-Seq interpretation session 2 - Slides [8] |
| Mon December 10, 2018 | 2:00pm-4:00pm | Duanduan Ma | Building 76 | 76-259 | Introduction to UNIX and the KI/BioMicro computational resources |
| Thursday Jan 31, 2019 | 10am-12pm | Charlie Whittaker | Building 14N (DIRC) | 14N-132 | Gene Set Enrichment Analysis |
| Mon February 11, 2019 | 2:30pm-4:00pm | Duanduan Ma | Building 68 | 68-674 | Introduction of Python to biologists session 1 |
| Mon March 11, 2019 | 2:30pm-4:30pm | Duanduan Ma | Building 76 | 76-259 | Introduction of Python to biologists session 2 |
| Mon April 8, 2019 | 2:00pm-4:00pm | Duanduan Ma | Building 68 | 68-180 | Introduction to UNIX and the KI/BioMicro computational resources |
| Mon May 13, 2019 | 2pm-4pm | Duanduan Ma | Building 68 | 68-121 | Introduction to R session 1 |
| Mon June 10, 2019 | 2pm-4pm | Duanduan Ma | Building 76 | 76-659 | Introduction to R session 2 |
| Mon July 8, 2019 | 2:00pm-4:00pm | Duanduan Ma | Building 56 | 56-602 | Introduction to UNIX and the KI/BioMicro computational resources |
Introduction to R
A class split into two hands-on sessions will introduce R to biologists. No previous programing experience is required.
Monday, May13th 2019: 2-4pm Room 68-121
This first session will go over the basics including data types/data structures and functions in R
Monday, June 10th 2019: 2-4pm Room 76-659
This second session will cover topics such as data manipulation, simple statistics, and plotting using R.
Please contact Duan Ma (duan@mit.edu) to sign up. Class size is limited, but future classes covering similar topics will be scheduled according to demand.
