Berk2006-Sequencing

Return to main page

---

seq run	date	Construct	clone	Oligo	Result	File Link
iG001	JCA_060806	pSB1A2-J01129	stock	ca998	OK read, matches model	iG001
iG002	JCA_060806	pSB1A2-J01122	stock	ca998	OK read, matches model	iG002
iG003	JCA_060806	pSB1A2-J01122	stock	ca999	Failed read	iG003
iG004	BCH_062206	pSB3C6-J01122-A	miniprep A	ca1000	the tube was mislabeled and it turns out that the clone was 1022	iG004
iG005	BCH_062206	pSB3C6-J01122-A	-80 stock A	ca1000	parent vector...not a lock	iG005
iG006	JL_062706	pSB1A2-J23003	1	BBa_G00101	OK read, matches model	iG006
iG007	JL_062706	pSB1A2-J23003	2	BBa_G00101	OK read, matches model	iG007
iG008	JL_062906	pSB1A2-J01064	from -80	ca998	perfect	iG008
iG009	JL_062906	pSB3C6-J01093	??	ca1000	perfect	iG009
iG010	JL_062906	pSB3C6-J01024	??	ca1000	sequence is correct but in registry TrajR is reversed	iG010
iG011	JL_062906	pSB1AK3-J01001	from -80	ca998	perfect	iG011
iG012	JL_063006	pSB1A2-J01003	mini-prep	ca998	Good, but did not get read in the 5' end	iG012
iG013	KAD_070306	pJ23006-1	mini-prep	ca998	Good read, matches model	iG013
iG014	KAD_070306	pJ23006-2	mini-prep	ca998	Good read, matches model	iG014
iG015	KAD_070306	pJ23004-1	mini-prep	ca998	is pJ23006	iG015
iG016	KAD_070306	pJ23004-1	mini-prep	BBa_G00101	is pJ23006	iG016
iG017	KAD_070306	pSB3C6-J01122	mini-prep	ca1000	Does not match model	iG017
iG018	KAD_070706	pJ23006	mini-prep	ca998	failed read	iG018
iG019	KAD_070706	J01063 (Lock1)	mini-prep	ca998	Does not match model: is basic lock1 part and lacks ptet, rfp, and double terminator	iG019
iG020	KAD_070706	J01068 (Lock2)	mini-prep	ca998	Does not match model: is basic lock2 part and lacks ptet, rfp, and double terminator	iG020
iG021	KAD_070706	pSB3C6-J01122-A3	mini-prep	ca1000	perfect	iG021
iG022	KAD_070706	pSB3C6-J01122-A4	mini-prep	ca1000	perfect	iG022
iG023	KAD_071006	pJ23006	mini-prep	ca998	correct	iG023
iG024	KAD_071006	pSB3C6-J01122-1	mini-prep	ca1000	wrong	iG024
iG025	KAD_071006	pSB1A2-J01129	mini-prep	ca998	correct	iG025
iG026	KAD_071006	pJ23006-I13522-1	mini-prep	ca998	correct	iG026
iG027	KAD_071006	pJ23006-I13522-2	mini-prep	ca998	correct	iG027
iG028	KAD_071106	pJ23006-J23007-3	miniprep	ca998	failed read	iG028
iG029	KAD_071106	pJ23006-J23008-2	miniprep	ca998	failed read	iG029
iG030	KAD_071206	pSB1A2-J01055	miniprep	ca998	perfect match	iG030
iG031	KAD_071206	pSB1A2-J01020 (from Box2)	miniprep	ca998	point mutation. needs further analysis	iG031
iG032	KAD_071406	pJ23006-J23008	miniprep	ca998	perfect	iG032
iG033	KAD_071406	pJ23006-J23007	miniprep	ca998	perfect	iG033
iG034	BCH_071706	pJ23006-J23007-2.1	miniprep	ca998	perfect	iG034
iG035	BCH-071706	pJ23006-J23007-3.1	miniprep	ca998	only matches for beginning	iG035
iG036	BCH_071706	pJ23006-J23008-3.1	miniprep	ca998	only matches for beginning	iG036
iG037	BCH_071706	pJ23006-J23008-4.1	miniprep	ca998	only matches for beginning	iG037
iG038	BCH_071706	pJ23006-994Library-1	miniprep	ca998		iG038
iG039	BCH_071706	pJ23006-994Library-8	miniprep	ca998		iG039
iG040	SIL_072106	pSB1A2-J23011	miniprep	ca998	matches	iG040
iG041	SIL_072106	pSB1A2-J23013	miniprep	ca998	(front) matches	iG041
iG042	SIL_072106	pSB1A2-J23013	miniprep	G00101	(back) matches	iG042
iG043	KAD_072406	pSB1A2-J01129-B0015-1 (pSB1A2-J23023-1)	miniprep	ca998	matches model, but has two gaps between the SpeI site and the beginning of the ColEI origin, increased gaps as read starts towards end of read	iG043
iG044	KAD_072406	pSB1A2-J01129-B0015-2 (pSB1A2-J23023-2)	miniprep	ca998	matches model, but has a point mutation between the NotI and XbaI sites, a gap between the PstI site and the ColEI origin, a point mutation in the beginning of the ColEI origin, increased gaps towards end of read	iG044
iG045	BCH_072406	pJ23006-23009-1	miniprep	ca998	read drops off short presumably due to the construct's strong secondary structure. we dont know what to do about this.	iG045
iG046	KAD_072606	pSB1A2-J23029	miniprep	ca998	perfect match, but one bp mutation between NotI and XbaI sites	iG046
iG047	KAD_072606	pACSer2AGGA	PCR	ca1000	good read, but has several point mutations	iG047
iG048	KAD_072606	pSB1A3-I13450-1	miniprep	ca998	Very close, but a little off. Need to update model	iG048
iG049	SIL_072706	pSB1A2-J23014	miniprep	ca998	matches	iG049
iG050	MF_073106	pBca1020-Bca1022 lib hit A	miniprep	ca998	good	iG050

Start 51-100

iG051	MF_073106	pBca1020-Bca1022 lib hit B	miniprep	ca998	good	iG051
iG052	MF_073106	pBca1020-Bca1022 lib hit C	miniprep	ca998	good	iG052
iG053	MF_073106	pBca1020-Bca1022 lib hit D	miniprep	ca998	good	iG053
iG054	MF_073106	pBca1020-Bca1022 lib hit E	miniprep	ca998	good	iG054
iG055	MF_073106	pBca1020-Bca1022 lib hit F	miniprep	ca998	good	iG055
iG056	MF_073106	pBca1020-Bca1022 lib hit White D7	miniprep	ca998	good	iG056
iG057	MF_073106	pBca1020-Bca1022 lib hit Red F6	miniprep	ca998	failed read	iG057
iG058	MF_073106	pBca1020-Bca1022 lib hit Red D7	miniprep	ca998	failed read	iG058
iG059	MF_073106	pBca1020-Bca1022 lib hit Red A2	miniprep	ca998	good	iG059
iG060	KAD_080106	pSB1A3-J23037-3	miniprep	ca998	matches model, one base pair mutation in ColEI	iG060
iG061	KAD_080106	pSB1A3-J23037-4	miniprep	ca998	matches model, one base pair mutation in ColEI	iG061
iG062	bch_080106	pSB3C6-J23018-1 (part J23019)	miniprep	ca1000	perfect	iG062
iG063	bch_080106	pSB3C6-J23018-2 (part J23019)	miniprep	ca1000	perfect	iG063
iG064	bch_080106	pJ23006-J23036-1	miniprep	ca998	perfect	iG064
iG065	bch_080106	pJ23006-J23035-1	miniprep	ca998	wrong, recomb excision product	iG065
iG066	bch_080106	pJ23006-23034-3	miniprep	ca998	wrong, recomb excision product	iG066
iG067	bch_080106	pJ23006-J23033-1	miniprep	ca998	wrong, recomb excision product	iG067
iG068	bch_080106	pJ23006-J23032-1	miniprep	ca998	perfect	iG068
iG069	bch_080106	pJ23006-J23031-1	miniprep	ca998	perfect	iG069
iG070	bch_080106	pJ23006-J23030-1	miniprep	ca998	deletion at SpeI site	iG070
iG071	KAD_080206	pSB1A2-J23029-2D	miniprep	ca998	good	iG071
iG072	KAD_080206	pSB1A2-J23029-4D	miniprep	ca998	good	iG072
iG073	KAD_080306	pSB3C6-Bca1025-1	miniprep	KB009	failed read	iG073
iG074	KAD_080306	pSB3C6-Bca1025-2	miniprep	KB009	failed read	iG074
iG075	SIL_080306	pSB1A2-J23038-1	miniprep	ca998	failed read	iG075
iG076	SIL_080306	pSB1A2-J23038-2	miniprep	ca998	failed read	iG076
iG077	SIL_080306	pSB1A2-J23028-3	miniprep	ca998	perfect	iG077
iG078	SIL_080306	pSB1A2-J23028-4	miniprep	ca998	good	iG078
iG079	bch_080306	pS23006- J23009-1	mini	G00101	read failed due to secondary structure probably	iG079
iG080	bch_080306	pSB3C6- J23018	midi	ca1001		iG080
iG081	kad_080806	psB3C6- bca1025-1	mini	ca1001	perfect	iG081
iG082	kad_080806	psB3C6- bca1025-2	mini	ca1001	point mutation	iG082
iG083	BCH_080806	pJ23006-J23043-1	mini	ca998		iG083
iG084	BCH_080806	pJ23006-J23044-1	mini	ca998	should have used G00101 instead because of the secondary structure of key3d	iG084
iG085	MF_080906	pSB1A2-J23038	mini	ca998	wrong	iG085
iG086	KAD_080906	pSB1A2-J23046-1 (rename me as J23063-1)	mini	ca998	matches Pcon-Ser2AGGA #J23063	iG086
iG087	KAD_080906	pSB1A2-J23046-2 (rename me as J23063-2)	mini	ca998	matches Pcon-Ser2AGGA #J23063	iG087
iG088	KAD_080906	pSB1A2-J23061-2 (rename me as J23064-2)	mini	ca998	matches Pcon-Ser2AGGA #J23054	iG088
iG089	KAD_080906	pSB1A2-J23061-4 (rename me as J23064-4)	mini	ca998	matches Pcon-Ser2AGGA #J23064	iG089
iG090	bch_080906	pJ23006-J23044-1	mini	BBa-G00101		iG090
iG091	BCH_081006	pSB1A2-J23041-1	mini	ca998		iG091
iG092	BCH_081006	pSB1A2-J23042-1	mini	ca998		iG092
iG093	WRB_081106	pSB1A2-J23040	mini	ca998		iG093
iG094	WRB_081106	pSB1AK3-J23039(5)	mini	ca998		iG094
iG095	WRB_081106	pSB1AK3-J23039(6)	mini	ca998		iG095
iG096	MF_081106	pBca1020-Bca1022 hit A	mini	ca998	excellent	iG096
iG097	MF_081106	pBca1020-Bca1022 hit B	mini	ca998	excellent	iG097
iG098	MF_081106	pBca1020-Bca1022 hit D	mini	ca998	excellent	iG098
iG099	MF_081106	pBca1020-Bca1022 hit A2	mini	ca998	excellent	iG099
iG100	MF_081106	pBca1020-Bca1022 hit A5	mini	ca998	excellent	iG100

Start 101-150

iG101	MF_061106	pBca1020-Bca1022 hit F4	mini	ca998	excellent	iG101
iG102	KAD_081106	pSB3C6-J23032-1	mini	ca1000	perfect	iG102
iG103	KAD_081106	pSB3C6-J23031-1	mini	ca1000	perfect	iG103
iG104	KAD_081106	pSB3C6-J12036-1	mini	ca1000	this came out completely wrong. genomic DNA was amplified and inserted some how.	iG104
iG105	BCH_081406	pJ23006-J23022-1	mini	G00101	good, b0015 present	iG105
iG106	MF_081506	pBca1020-Bca1022 lib hit E10	mini	ca998		iG106
iG107	MF_081506	pBca1020-Bca1022 lib hit F12	mini	ca998		iG107
iG108	MF_081506	pBca1020-Bca1022 lib hit B9	mini	ca998		iG108
iG109	MF_081506	pBca1020-Bca1022 lib hit C5	mini	ca998		iG109
iG110	MF_081506	pBca1020-Bca1022 lib hit C1	mini	ca998		iG110
iG111	MF_081506	pBca1020-Bca1022 lib hit RC2	mini	ca998		iG111
iG112	MF_081506	pBca1020-Bca1022 lib hit WD7	mini	ca998		iG112
iG113	MF_081506	pBca1020-Bca1022 lib hit WC2	mini	ca998		iG113
iG114	MF_081506	pBca1020-Bca1022 lib hit B10	mini	ca998		iG114
iG115	MF_081506	pBca1020-Bca1022 lib hit E11	mini	ca998		iG115
iG116	MF_081506	pBca1020-Bca1022 lib hit F3	mini	ca998		iG116
iG117	MF_081506	pBca1020-Bca1022 lib hit F6	mini	ca998		iG117
iG118	MF_081506	pBca1020-Bca1022 lib hit E8	mini	ca998		iG118
iG119	MF_081506	pBca1020-Bca1022 lib hit H12	mini	ca998		iG119
iG120	MF_081506	pBca1020-Bca1022 lib hit E1	mini	ca998		iG120
iG121	MF_081506	pBca1020-Bca1022 lib hit RD7	mini	ca998		iG121
iG122	BCH_081506	pJ23006-J23066-1	mini	G00101		iG122
iG123	MF_081606	pSB1A2-J23038-2	mini	ca998	messy	iG123
iG124	MF_081606	pSB1A2-J23038-3	mini	ca998	messy	iG124
iG125	MF_081606	pSB1A2-J23038-4	mini	ca998	very messy read, but is correct (barring any unlikely point mutations)	iG125
iG126	SIL_081706	pJ23006-J23061-1	mini	ca998	perfect	iG126
iG127	SIL_081706	pJ23006-J23061-2	mini	ca998	duplicatin of bamHI/HindIII region, would still be usable, though	iG127
iG128	WRB_081706	pSB1A2-J23040	mini	G00101	correct	iG128
iG129	SIL_082406	pJ23006-J23070 #1	mini	ca998	perfect	iG129
iG130	SIL_082406	pJ23006-J23062 #1	mini	ca998	perfect, had to recreate sequence files, though	iG130
iG131	JL082506	pSB3C6-J23071 #1	mini	ca1000	failed read	iG131
iG132	JL082506	pSB3C6-J23071 #2	mini	ca1000	perfect	iG132
iG133	JL090806	pSB1AK3-J23075 #1	mini	ca998	no promoter	iG133
iG134	JL090806	pSB1AK3-J23075 #2	mini	ca998	failed read	iG134
iG135	JL090806	pSB1AK3-J23074 #1	mini	ca998	no promoter	iG135
iG136	JL090806	pSB1AK3-J23074 #2	mini	ca998	no promoter	iG136
iG137	Jl090806	psB1A2-J23119	mini	ca998	perfect	iG137
iG138	SL090806	pSB3C6-J23072-2	mini	ca1000	no RFP	iG138
iG139	JL091306	pJ23019-J23072 #5	mini	ca1000	perfect	iG139
iG140	JL091606	J23077 #1	mini	ca1000	good, had to correct the bp bet/ N and X	iG140
iG141	JL091606	J23078 #1	mini	ca998	perfect	iG141
iG142	SL100206	pSB1AG0-J23038-1	mini	G01001	did not match the model	iG142
iG143	SL100206	pSB1AG0-J23038-2	mini	G01001	perfect!	iG143
jca313	111406	pSB3C6-J23090	#1	ca1000	perfect	jca313
iG144	SL120106	pJ23006-J23201	mini	ca998	perfect	iG144
iG145	SL120106	pJ23006-J23203	mini	ca998	perfect	iG145
iG146	SL120106	pJ23006-J23205	mini	ca998	spacers had 4 extra bps (a's) each - matches J23207 instead	iG146
iG147	SL120106	pJ23006-J23207	mini	ca998	spacers had 4 fewer bps each - matches J23205 model instead	iG147
jca335	JL120406	psB1A2-Bca1041	mini	ca998	wrong	iG148
jca336	JL120406	pJ23006-Bca9094	mini	G00101	Good	iG149
iG150	SIL120906	pJ23006-J23202	mini	ca998	Wrong	iG150

Start 151-200 Current

iG151	SIL120906	pJ23006-J23204	mini	ca998	wrong (parent)	iG151
iG152	SIL120906	pJ23006-J23205	mini	ca998	good at least w/i BH	iG152
iG153	SIL120906	pJ23006-J23206	mini	ca998	good at least w/i BH	iG153
iG154	SIL120906	pJ23006-J23207	mini	ca998	good at least w/i BH	iG154
iG155	SIL120906	pJ23006-J23208	mini	ca998	Duplicated	iG155
iG156						iG156
iG157						iG157
iG158						iG158
iG159						iG159
iG160						iG160
iG161						iG161
iG162						iG162
iG163						iG163
iG164						iG164
iG165						iG165
iG166						iG166
iG167						iG167
iG168						iG168
iG169						iG169
iG170						iG170
iG171						iG171
iG172						iG172
iG173						iG173
iG174						iG174
iG175						iG175
iG176						iG176
iG177						iG177
iG178						iG178
iG179						iG179
iG180						iG180
iG181						iG181
iG182						iG182
iG183						iG183
iG184						iG184
iG185						iG185
iG186						iG186
iG187						iG187
iG188						iG188
iG189						iG189
iG190						iG190
iG191						iG191
iG192						iG192
iG193						iG193
iG194						iG194
iG195						iG195
iG196						iG196
iG197						iG197
iG198						iG198
iG199						iG199
iG200						iG200

Start 201-250

iG201						iG201
iG202						iG202
iG203						iG203
iG204						iG204
iG205						iG205
iG206						iG206
iG207						iG207
iG208						iG208
iG209						iG209
iG210						iG210
iG211						iG211
iG212						iG212
iG213						iG213
iG214						iG214
iG215						iG215
iG216						iG216
iG217						iG217
iG218						iG218
iG219						iG219
iG220						iG220
iG221						iG221
iG222						iG222
iG223						iG223
iG224						iG224
iG225						iG225
iG226						iG226
iG227						iG227
iG228						iG228
iG229						iG229
iG230						iG230
iG231						iG231
iG232						iG232
iG233						iG233
iG234						iG234
iG235						iG235
iG236						iG236
iG237						iG237
iG238						iG238
iG239						iG239
iG240						iG240
iG241						iG241
iG242						iG242
iG243						iG243
iG244						iG244
iG245						iG245
iG246						iG246
iG247						iG247
iG248						iG248
iG249						iG249
iG250						iG250

Start 251-300

iG251						iG251
iG252						iG252
iG253						iG253
iG254						iG254
iG255						iG255
iG256						iG256
iG257						iG257
iG258						iG258
iG259						iG259
iG260						iG260
iG261						iG261
iG262						iG262
iG263						iG263
iG264						iG264
iG265						iG265
iG266						iG266
iG267						iG267
iG268						iG268
iG269						iG269
iG270						iG270
iG271						iG271
iG272						iG272
iG273						iG273
iG274						iG274
iG275						iG275
iG276						iG276
iG277						iG277
iG278						iG278
iG279						iG279
iG280						iG280
iG281						iG281
iG282						iG282
iG283						iG283
iG284						iG284
iG285						iG285
iG286						iG286
iG287						iG287
iG288						iG288
iG289						iG289
iG290						iG290
iG291						iG291
iG292						iG292
iG293						iG293
iG294						iG294
iG295						iG295
iG296						iG296
iG297						iG297
iG298						iG298
iG299						iG299
iG300						iG300

Start 301-350

iG301						iG301
iG302						iG302
iG303						iG303
iG304						iG304
iG305						iG305
iG306						iG306
iG307						iG307
iG308						iG308
iG309						iG309
iG310						iG310
iG311						iG311
iG312						iG312
iG313						iG313
iG314						iG314
iG315						iG315
iG316						iG316
iG317						iG317
iG318						iG318
iG319						iG319