Ashley Rhoades Week 9
From OpenWetWare
Jump to navigationJump to search
Week 9 Journal
Part One
These are the number of genes that fall into each significance level for each time period.
- T15
- P<0.05 - 781
- P<0.01 - 218
- P< 0.001 - 21
- P<0.0001 - 1
- T30
- P<0.05 - 1539
- P<0.01 - 456
- P< 0.001 - 55
- P<0.0001 - 2
- T60
- P<0.05 - 1559
- P<0.01 - 384
- P< 0.001 - 51
- P<0.0001 - 6
- T90
- P<0.05 - 538
- P<0.01 - 129
- P< 0.001 - 9
- P<0.0001 - 1
- T120
- P<0.05 - 564
- P<0.01 - 114
- P< 0.001 - 16
- P<0.0001 - 5
Part Two
These are the number of genes that fall under a p<0.05 significance threshold with the Bonferroni correction.
- T15: 1 value
- T30: 0
- T60: 2
- T90: 1
- T120: 0
Part 3
These are the average log folds with significance p<0.05.
- T15
- Greater than zero: 437
- Less than zero: 771
- Greater than .25: 402
- Less than -.25: 256
- T30
- Greater than zero: 713
- Less than zero: 826
- Greater than .25: 673
- Less than -.25: 770
- T60
- Greater than zero: 760
- Less than zero: 799
- Greater than .25: 727
- Less than -.25 : 745
- T90
- Greater than zero: 319
- Less than zero: 219
- Greater than .25: 277
- Less than -.25: 194
- T120
- Greater than zero: 332
- Less than zero: 232
- Greater than .25: 245
- Less than -.25: 170
Part 4
This is the data for the gene NSR1.
- Average at time 15: 1.2
- P value: 0.0046
- Average at time 30: 1.98
- P value: 0.0180
- Average at time 60: 1.96
- P value: 0.0151
- Average at time 90: -0.75
- P value: 0.0676
- Average at time 120: -0.63
- P value: 0.1601
There were significant changes at time 15,30, and 60 for a significance threshold of p<0.05.
Part 5
The gene with the smallest p value is YPR059C with p=4.73816675697583E-06. Unfortunately in the database little to nothing is known about this gene. The only information available was that it most likely does not code for a protein.
Survey of Biomathematics
- Ashley Rhoades
- Loyola Marymount University
- Email me through OpenWetWare
- BIOL398-03/S13
