Alm:Genome Assembly

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NCBI short read archive

Relevant Literature

Nagarajan et al. Scaffolding and validation of bacterial genome assemblies using optical restriction maps. Bioinformatics (2008) vol. 24 (10) pp. 1229-35

Brockman et al. Quality scores and SNP detection in sequencing-by-synthesis systems. Genome Res (2008) vol. 18 (5) pp. 763-70

Hernandez et al. De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. Genome Res (2008) vol. 18 (5) pp. 802-9

Butler et al. ALLPATHS: de novo assembly of whole-genome shotgun microreads. Genome Res (2008) vol. 18 (5) pp. 810-20

Zerbino et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res (2008) vol. 18 (5) pp. 821-9

Chaisson et al. Short read fragment assembly of bacterial genomes. Genome Res (2008) vol. 18 (2) pp. 324-30

Jeck et al. Extending assembly of short DNA sequences to handle error. Bioinformatics (2007) vol. 23 (21) pp. 2942-4

Pevzner et al. An Eulerian path approach to DNA fragment assembly. Proc Natl Acad Sci USA (2001) vol. 98 (17) pp. 9748-53

Pevzner et al. Fragment assembly with double-barreled data. Bioinformatics (2001) vol. 17 Suppl 1 pp. S225-33