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AMPHORA is an automated phylogenomic inference application for large-scale protein phylogenetic analysis. It has been applied to automated genome tree construction and metagenomic sequence phylotyping.

AMPHORA has been updated. See [1] for AMPHORA2.

AmphoraNet [2] is the easy-to-use webserver version of AMPHORA2 and AmphoraVizu [3] is an online visualization tool for the outputs of AMPHORA2.