Revision as of 05:15, 17 August 2013

Journal name	Publisher	Open access status	Link
ACS Synthetic Biology	American Chemical Society	No	http://pubs.acs.org/journal/asbcd6
Bioengineered (Previously: Bioengineered bugs)	Landes Bioscience	Partial	http://dev.landesbioscience.com/journals/bioe/
Bioinformatics	Oxford Journals		http://bioinformatics.oxfordjournals.org/
Biology Open	Company of Biologists	Yes	http://bio.biologists.org/
BMC Medical Genomics	BMC	Yes	http://www.biomedcentral.com/bmcmedgenomics/
BMC Proceedings	BMC	Yes	http://www.biomedcentral.com/bmcproc
PLOS One	Public Library of Science	Yes	http://www.plosone.org/
Nucleic Acids Research	Oxford Journals	Yes	http://nar.oxfordjournals.org/
BMC Systems Biology	BioMedCentral	Yes	http://www.biomedcentral.com/bmcsystbiol/
BMC Microbiology	BioMedCentral	Yes	http://www.biomedcentral.com/bmcmicrobiol
Cell	Cell Press		http://www.cell.com/
Cell Reports	Cell Press	Yes	http://cellreports.cell.com/
The EMBO Journal	Nature Publishing Group	No	http://www.nature.com/emboj/index.html
Frontiers in Synthetic Biology	Nature Publishing Group		http://www.frontiersin.org/Synthetic_Biology/about
Genetics	Genetics Society of America		http://www.genetics.org/
G3: Genes, Genomes, Genetics Mission	Genetics Society of America		http://www.g3journal.org/
Genome Research	Cold Spring Harbor Press	Partial (6 month embargo)	http://genome.cshlp.org/
Genome Biology	BMC	Yes	http://genomebiology.com/
Genome Medicine	BioMedCentral	Yes	http://genomemedicine.com/
Journal of Experimental Biology	Company of Biologists	http://jeb.biologists.org/
Journal of molecular biology	Elsevier	Partial	http://www.journals.elsevier.com/journal-of-molecular-biology/
Journal of biological chemistry	American Society for Biochemistry and Molecular Biology.	No	http://www.jbc.org/
Journal of bacteriology	American Society for Microbiology	No	http://jb.asm.org/
Journal of Bioscience and Engineering			http://www.journals.elsevier.com/journal-of-bioscience-and-bioengineering/
Journal of clinical microbiology	American Society for Microbiology	No	http://jcm.asm.org/
mBio	ASM	Yes	http://mbio.asm.org/
Methods	Elsevier	No	http://www.journals.elsevier.com/methods
Microbiology	SGM/HighWire Press	No	http://mic.sgmjournals.org/
Microbiology and Molecular Biology Reviews (MMBR). Formerly Bacteriology Reviews	ASM		mmbr.asm.org
Metabolic Engineering	Elsevier	Partial	http://www.journals.elsevier.com/metabolic-engineering/
Molecular Systems Biology	EMBO/Nature Publishing Group	Yes	http://www.nature.com/msb/index.html
PLOS Computational Biology	Public Library of Science	Yes	http://www.ploscompbiol.org/
PLOS Pathogens	PLOS	Yes	http://www.plospathogens.org/
Proceedings of the National Academy of Sciences	National Academy of Sciences	No	http://www.pnas.org/
Protein expression and purification	Elsevier	No	http://www.sciencedirect.com/science/journal/10465928
Genome Announcements	ASM	Yes	http://genomea.asm.org/
Futures	Elsevier	?	http://www.sciencedirect.com/science/journal/00163287
Microbial Cell Factories	BioMedCentral	Yes	http://www.microbialcellfactories.com/
Engineering Studies	Taylor & Francis	?	http://www.tandfonline.com/loi/test20
FEMS Microbiology Reviews			http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291574-6976
Nature Biotechnology	Nature Publishing Group	No	http://www.nature.com/nbt/index.html
Nature Genetics	Nature Publishing group	No	http://www.nature.com/ng/index.html
Plasmid	Elsevier	No	http://www.journals.elsevier.com/plasmid/
Journal of Computational Biology	Liebert Publishing	No	http://www.liebertpub.com/CMB
Trends in Biochemical Sciences	Elsevier		http://www.sciencedirect.com/science/journal/09680004
Trends in Microbiology	Elsevier/Cell Press		http://www.sciencedirect.com/science/journal/0966842X
Molecular Genetics & Genomic Medicine	Wiley	Yes	http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292324-9269
Molecular genetics and genomics	Springer Verlag		http://link.springer.com/journal/438
Biochemistry and Molecular Biology Education	Wiley	No	http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291539-3429
Current opinion in chemical biology	Elsevier		http://www.sciencedirect.com/science/journal/13675931
New England Journal of Medicine	NEJM Group		http://www.nejm.org/
Systems and Synthetic Biology	Springer		http://link.springer.com/journal/11693
Scientific Reports	Nature Publishing Group	Yes	http://www.nature.com/srep/index.html

Cold Spring Harbor Perspectives: http://cshperspectives.cshlp.org/

Computational and Structural Biotechnology Journal

http://www.journalnetwork.org/journals/science-general/citizen-science/citizen-science-innovation.html

Biotechniques: http://www.biotechniques.com/

https://www.openlibhums.org/

Current protocols in molecular biology: http://onlinelibrary.wiley.com/book/10.1002/0471142727

http://www.g3journal.org/

http://push.cwcon.org/

eLife: http://elife.elifesciences.org/

https://peerj.com/

Faculty of 1000: http://f1000.com/

Social Science Research Network: http://www.ssrn.com/

Open access:

http://en.wikipedia.org/wiki/List_of_open-access_journals

http://scholarlyoa.com/

http://www.doaj.org/

http://www.opendoar.org/

http://blogs.scientificamerican.com/guest-blog/2013/04/03/who-killed-the-preprint-and-could-it-make-a-return/

Publication tools:

https://collage.elsevier.com/

Reference management / Social bookmarking:

http://www.mendeley.com/

http://www.citeulike.org/

JabRef reference manager: http://jabref.sourceforge.net/

Publishers

Springer

Elsevier

CRC Press

Horizon Press

Databases/Repositories

PlasmID database: http://plasmid.med.harvard.edu/PLASMID/

Addgene plasmid repository: http://www.addgene.org/

DNASU plasid repository: http://dnasu.asu.edu/DNASU/

The Open Construct Database: http://www.the-odin.com

Bionumbers - The database of useful biological numbers

EcoCyc - E. coli K-12 MG1655 database: http://www.ecocyc.org/

EcoGene: http://www.ecogene.org

JWS Online model database: http://jjj.biochem.sun.ac.za/database/

http://systems-biology.org/resources/model-repositories/

Genome-Scale metabolic network database: http://synbio.tju.edu.cn/GSMNDB/gsmndb.htm

Array express: http://www.ebi.ac.uk/arrayexpress/

Rebase restriction enzyme database: http://rebase.neb.com/rebase/rebase.html

1000 genomes project: http://browser.1000genomes.org/index.html

BRENDA Enzymes: http://www.brenda-enzymes.info/

KEGG

GenBank

http://datadryad.org/

http://www.cathdb.info/

Codon usage

http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=83333

Codon usage analyzer: http://www.bioinformatics.org/sms2/codon_usage.html

Other informational resources

National Centre for Biotechnology Education: http://www.ncbe.reading.ac.uk/menu.html

http://seqanswers.com

NCBI vs EMBL vs DDBJ.: http://lib.bioinfo.pl/courses/view/151

The DDBJ/EMBL/GenBank Feature Table Definition: http://www.insdc.org/files/feature_table.html#1

http://openwetware.org/wiki/DNA - Contains many protocols

Bite Size Bio: http://bitesizebio.com/

BenchFly: http://www.benchfly.com/

http://biologicalworld.com/protocols.htm

http://www.methods.info/

http://www.biotechdaily.com/

http://www.zenbiology.com/

http://www.my-whiteboard.com/

http://lablife.org

http://www.molbiol-tools.ca/

http://www.molecularinfo.com/MTM/MTM.html

http://www.openhelix.com/ - Genomics and bioinformatics resources.

Programming

BioPython: http://biopython.org/wiki/Main_Page

CodEval - programming challenges: http://codeeval.com/

Law and ethics

http://www.genomicslawreport.com/

American journal of Bioethics: http://www.tandfonline.com/toc/uajb20/current

IASB Code of Conduct for best practices in gene synthesis: http://www.ia-sb.eu/go/synthetic-biology/synthetic-biology/code-of-conduct-for-best-practices-in-gene-synthesis/

IASB - About Biosafety & Security: http://www.ia-sb.eu/go/synthetic-biology/synthetic-biology/biosafety-biosecurity/

Andrew W Torrance on DNA copyright: http://papers.ssrn.com/sol3/papers.cfm?abstract_id=2017670

Cloning

SLIC, Gibson, CPEC and SLiCE assembly methods: http://j5.jbei.org/j5manual/pages/22.html

RF cloning: http://www.rf-cloning.org/QandA.php

PCR Primer design: http://bioweb.uwlax.edu/genweb/molecular/seq_anal/primer_design/primer_design.htm

PCR: http://www.molbiol-tools.ca/PCR.htm

OpenWetWare - designing primers: http://openwetware.org/wiki/Designing_primers

PCR Guide: http://medicine.yale.edu/labs/henegariu/www/tavi/Guide.html

PCR troubleshooting: http://medicine.yale.edu/labs/henegariu/www/tavi/Trblesht.html

DNA Tm estimation methods: http://openwetware.org/wiki/Primer_Tm_estimation_methods

DNA stability: http://openwetware.org/wiki/DNA_stability

E. coli cloning checklist: http://openwetware.org/wiki/Cloning_Checklist

Guide to Gibson assembly: http://www.synbio.org.uk/dna-assembly/guidetogibsonassembly.html

Primer design guidelines: http://www.premierbiosoft.com/tech_notes/PCR_Primer_Design.html

Sequencing

Design of sequencing primers: http://seqcore.brcf.med.umich.edu/doc/dnaseq/primers.html

Conserved primer sequences for PCR amplification and sequencing from nuclear ribosomal RNA in fungi: http://biology.duke.edu/fungi/mycolab/primers.htm

GenScript DNA Sequencing Primers Design Tool: http://www.genscript.com/cgi-bin/tools/sequencing_primer_design

Software tools

Molecular Biology Freeware for Windows: http://molbiol-tools.ca/molecular_biology_freeware.htm#Graphic%20packages

Molecular Biology & Bioinformatics Resources: http://library.weill.cornell.edu/eresources/molbio.html

Bioinformatics Tools and Resources for Biomedical Scientists and Students - http://www.changbioscience.com/virtualab.html

DNA copy number calculator: http://www.uri.edu/research/gsc/resources/cndna.html

Graphics software:

Systems Biology

http://systems-biology.org/

Cytoscape: www.cytoscape.org

CAIN stochastic simulations for chemical kinetics: http://cain.sourceforge.net/

COBRA Constraints-based modelling toolbox:

CellNetAnalyzer: http://www.mpi-magdeburg.mpg.de/projects/cna/cna.html

CellDesigner: http://celldesigner.org/

OptFlux: http://www.optflux.org/

Systems Biology Markup Language: www.sbml.org

SBML to LaTex report generator: http://www.cogsys.cs.uni-tuebingen.de/software/SBML2LaTeX/index.html

Systems Biology Toolbox 2 for MATLAB: http://www.sbtoolbox2.org/main.php

http://www.sysbio.de/

Handbook of Systems Biology: http://www.sciencedirect.com/science/book/9780123859440

Reflexive Systems Biology: http://portal.cbu.uib.no/rsb

Bioinformatics & Annotation

Neural Network Promoter Prediction: http://www.fruitfly.org/seq_tools/promoter.html

Artemis genome browser: http://www.sanger.ac.uk/resources/software/artemis/

BASYS Bacterial Annotation software: http://basys.ca/

SoftBerry: http://linux1.softberry.com/berry.phtml

Promethease: http://snpedia.com/index.php/Promethease

GLIMMER microbial gene-finding system: http://www.cbcb.umd.edu/software/glimmer/

Promoter & termination site search tools: http://molbiol-tools.ca/Promoters.htm

Phyre 2 - protein fold recognition: http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index

FITBAR DNA binding protein binding site predictor: http://archaea.u-psud.fr/fitbar/

Simple Consensus Maker: http://www.hiv.lanl.gov/content/sequence/CONSENSUS/SimpCon.html

Model SEED - blog: http://blog.theseed.org/model_seed/

Model SEED - Viewer: http://seed-viewer.theseed.org/seedviewer.cgi?page=ModelView

http://www.bioinformatics.org/

Plasmid map drawer: http://www.rf-cloning.org/savvy.php

EMBOSS ((European Molecular Biology Open Software Suite): http://bips.u-strasbg.fr/EMBOSS/

BioBrick -> GenBank converter: http://2010.igem.org/Team:Cambridge/Tools/GenBank

HMMER: http://hmmer.janelia.org/

Jcat Codon Adaption Tool: http://www.jcat.de/

Cloning & Construction

The Constructor: http://2011.igem.org/Team:Wageningen_UR/Softwaretool/

NEBcutter: http://tools.neb.com/NEBcutter2/

J5 automated DNA assembly: http://j5.jbei.org/index.php/Main_Page

Genome Compiler: http://www.genomecompiler.com/

Gibthon: http://django.gibthon.org/

Transcription and Translation: http://www.attotron.com/cybertory/analysis/trans.htm

All-IN-ONE SEQ-ANALYZER: http://www-personal.umich.edu/~ino/blast.html

GENtle 2: http://ec2-23-20-169-157.compute-1.amazonaws.com/dev/#

DNA oligomer design tools:

Primer-BLAST: http://www.ncbi.nlm.nih.gov/tools/primer-blast/

QuickChange primer design script: http://sosnick.uchicago.edu/stuff/quickchanger.pl

IDT SciTools - oligo design and analysis: http://eu.idtdna.com/scitools/scitools.aspx

PrimerDigital: http://primerdigital.com/tools/

Primer3: http://primer3.wi.mit.edu/

Primer3 plus: http://www.bioinformatics.nl/cgi-bin/primer3plus/primer3plus.cgi

InvitroGen OligoPerfect designer: http://tools.invitrogen.com/content.cfm?pageid=9716

PrimerQuest: www.idtdna.com/Scitools/Applications/Primerquest/

JCVI Primer designer: http://primerdesigner.sourceforge.net/

Primer Design Assistant: http://dbb.nhri.org.tw/primer/index.html

PrimerZ: http://genepipe.ngc.sinica.edu.tw/primerz/beginDesign.do

Primo PCR Primer Design: http://www.changbioscience.com/primo/primo.html

Eurofins PCR primer design: https://ecom.mwgdna.com/services/webgist/pcr_primer_design_new.tcl?ot=OLIGO_PCRD&item_id=new

Eurofins Sequencing primer design: https://ecom.mwgdna.com/services/manage-primers/design-primer.tcl

DNA/oligomer property calculators:

http://www.basic.northwestern.edu/biotools/oligocalc.html

In silico PCR tools:

http://exon.ucsc.edu/cgi-bin/hgPcr

http://insilico.ehu.es/PCR/

http://www.bioinformatics.org/sms2/pcr_products.html

http://qsnp.gen.kyushu-u.ac.jp/genome/InSilicoPCR.html

http://mfold.rna.albany.edu/?q=DINAMelt/Quickfold

http://www.molbiol-tools.ca/Repeats_secondary_structure_Tm.htm

Protocols

http://www.protocolpedia.com/

OpenWetWare protocols - main page: http://openwetware.org/wiki/Protocols

Springer Protocols: http://www.springerprotocols.com

Complementary annealing of oligonucleotides: http://www.sigmaaldrich.com/life-science/custom-oligos/custom-dna/learning-center/annealing-oligos.html

Knight lab - annealing protocol: http://openwetware.org/wiki/Knight:Annealing_and_primer_extension_with_Taq_polymerase

Knight lab -restriction digest protocol: http://openwetware.org/wiki/Knight:Restriction_Digest

Endy: Colony PCR: http://openwetware.org/wiki/Endy:Colony_PCR

Addgene Moleular cloning guide: http://www.addgene.org/plasmid_reference/index/#cloning

Addgene restriction digest protocol: http://www.addgene.org/plasmid_protocols/restriction_digest/

http://www.addgene.org/plasmid_protocols/bacterial_plates/

http://www.methods.info/Methods/RNA_DNA/restr_analysis.html

http://www.methodbook.net/dna/restrdig.html

Current Protocols: http://www.currentprotocols.com

Science Advisory Board - protocols: http://www.scienceboard.net/resources/protocols.asp?criteria=

Protocol online: http://protocol-online.org/

http://site.methodological.co/

http://bio-protocol.org/

Misc.

http://www.nature.com/scitable

https://www.assaydepot.com/

https://www.scienceexchange.com/

http://matt.might.net

http://www.reportergene.com/2011/10/eln-electronic-lab-notebooks.html

http://www.phdontrack.net/

Misc. molecular biology freeware: http://molbiol-tools.ca/molecular_biology_freeware.htm

J Craig Venter Institute - software: http://www.jcvi.org/cms/research/software/

DNA sequence transformation tools: http://molbiol-tools.ca/Convert.htm

The Oligator: http://gcat.davidson.edu/igem10/tutorial.html

http://www.zappylab.com/apps

Nucleic Acid sequence massager: http://www.attotron.com/cybertory/analysis/seqMassager.htm

String functional protein interaction networks: http://string-db.org/newstring_cgi/show_input_page.pl?UserId=y_1_rGDH3F2_&sessionId=JqYi1VB4HXQn

ProtLifePred protein lifetime calculator: http://protein-n-end-rule.leadhoster.com/

US National Human Genome Research Institute: http://www.genome.gov/

Codon table: http://en.wikipedia.org/wiki/DNA_codon_table

LaTeX lab book: http://openwetware.org/wiki/LabbookInLatex

Los Alamos Technical Reports collection: http://www.sciencemadness.org/lanldocs.html

http://thelabrat.com

The reproducibility project: http://openscienceframework.org/project/EZcUj/wiki/home

NCBI Coffee Break: http://www.ncbi.nlm.nih.gov/books/NBK2345/

http://www.lablit.com/

Addgene - Genome engineering Guide: https://www.addgene.org/Genome_Engineering/?utm_source=Addgene+March+14%2C+2013+Newsletter+Final&utm_campaign=March+2013+Newsletter&utm_medium=email

https://genomeinterpretation.org

Science News & Discussion

Magazines/Blogs/Newssites

http://www.labcritics.com/

http://scienceblok.com/

http://sciblogs.co.nz/

http://www.scicentral.com/index.html

http://blogs.discovermagazine.com/seriouslyscience/

http://epigenie.com/

http://www.livescience.com/

http://scienceblogs.com/

http://scientopia.org/blogs/

The SynBioLogist: http://paper.li/Socrates_Logos/1306934563#

SciTech Daily: http://scitechdaily.com/

The Scientist: http://www.the-scientist.com/

GEN Magazine: http://www.genengnews.com/

Synthetic biology - Biohacking: http://paper.li/Karelman/1353849467

http://www.reportergene.com/

Super awesome Sylvia: http://sylviashow.com/

http://www.technologyreview.com/

http://www.scilogs.com/

Blogs:

http://ironchefsynbio.wordpress.com/

http://retractionwatch.wordpress.com/

http://www.genomesunzipped.org/

http://ing.dk/blogs/folkeforsker

http://phylogenomics.blogspot.no/

http://88proof.com/synthetic_biology/blog/

http://bytesizebio.net

The hardest science - a psychology blog: http://hardsci.wordpress.com/

http://dienekes.blogspot.no/

Michael Eisen - It's Not Junk: http://www.michaeleisen.org/blog/

Open Helix: http://blog.openhelix.eu/

http://ivory.idyll.org/

http://titojankowski.com/

Aggregators:

http://paper.li/SAGRudd/1323661247

http://paper.li/leclercfl/bioscience

The Daily Plasmid: http://paper.li/DesktopGenetics/1360025246 Norwegian:

http://thaliana.blogg.no/1290598240_molekylrbiologi.html

Social & personalized media:

http://storify.com/GenomeMedicine/gene-patenting-a-genome-medicine-twitter-chat

http://trap.it/

Discussion sites:

http://pubpeer.com/

In the news/Commentaries

George Church - Reading and writing omes: http://www.nature.com/msb/journal/v9/n1/full/msb201275.html

Synthetic Biology comes down to Earth: http://chronicle.com/article/Synthetic-Biology-Comes-Down/137587/

Predictability - the brass ring for synthetic biology: http://newscenter.lbl.gov/science-shorts/2013/03/13/predictability-the-brass-ring-for-synthetic-biology/

Press Release - Bootstrapping Biotechnology: Engineers Cooperate to Realize Precision Grammar for Programming Cells http://www.synberc.org/bootstrapping-biotechnology

HeLa genome sequenced: http://www.embl-hamburg.de/aboutus/communication_outreach/media_relations/2013/130311_Heidelberg/index.html

Tools for the synthetic biology revolution: http://www.research.gov/research-portal/appmanager/base/desktop;jsessionid=3TGCRFyZ9XnN15qs8j88ln1pDTfthtMjVl182LxzvNVG84tp0M1g!-943464721!1767787818?_nfpb=true&_windowLabel=awardSummary_1&_urlType=action&awardSummary_1_action=selectAwardDetail&awardSummary_1_id=%2FresearchGov%2FAwardHighlight%2FPublicAffairs%2F23670_ToolsfortheSyntheticBiologyRevolution.html

Badomics: http://www.gigasciencejournal.com/content/1/1/6

http://keithbradnam.com/blog/2013/6/23/introducing-jabba-just-another-bogus-bioinformatics-acronym.html

Jobs

https://www.odesk.com/

http://www.tu.no/jobb/

http://www.aftenposten.no/jobb/

http://www.ingeniorstillinger.no/

http://no.indeed.com/jobs?q=Ingeni%C3%B8r&gclid=CJL3_IiL47YCFQdd3godpBMArQ

http://www.nature.com/naturejobs/science/jobs

http://www.teknologijobb.no/jobads/Legg%20til%20i%20filter/Bransje/152

http://yes.jucan.no/

https://uio.easycruit.com/

Tips:

Search professional/business search sites for companies in fields of interest. Company webpages may not be updated to show vacant positions. To avoid missing vacancies, save pages on job portals showing vacancies on a company basis.

Games

BioHack: http://marketplace.xbox.com/en-US/Product/BioHack/66acd000-77fe-1000-9115-d802585505ee

http://eterna.cmu.edu/web/

http://adamilab.msu.edu/evolve-and-conquer/

http://fold.it/portal/

http://phylo.cs.mcgill.ca/ (publication: http://www.plosone.org/article/info:doi/10.1371/journal.pone.0031362)

http://io9.com/these-cool-games-let-you-do-real-life-science-486173006

http://www.citizensort.org/

http://sourceforge.net/projects/brainworkshop/?source=directory

Just for Fun

Origin of the Species in Dub: http://pathogenomics.bham.ac.uk/Dub/origin.html

NCBI ROFL: http://blogs.discovermagazine.com/discoblog/category/ncbi-rofl/

The PCR song: http://www.youtube.com/watch?v=x5yPkxCLads

Biorad GTCA song: http://www.youtube.com/watch?NR=1&feature=endscreen&v=ID6KY1QBR5s

iGEM style! http://www.youtube.com/watch?v=KHhswxo6xow

English Tea Time Gene: http://partsregistry.org/Part:BBa_J49005

Trust me, I'm an engineer: http://www.youtube.com/watch?v=rp8hvyjZWHs

I'm an Engineering failure: http://www.youtube.com/watch?v=ro3EPPYbn44

DNA text codec: http://www.sgidna.com/translator.php

Funny bioinformatic tool names: http://www.biostars.org/p/67874/

http://abstrusegoose.com

http://www.davelunt.net/evophylo/2012/12/printing-out-genbank-nucleotide-sequences-1984/

Enclothed cognition: http://www.sciencedirect.com/science/article/pii/S0022103112000200

robotniknin: http://www.ncbi.nlm.nih.gov/pubmed/19151731 .

Arxiv vs Snarxiv: http://snarxiv.org/vs-arxiv/

YouTube

https://groups.google.com/forum/?fromgroups=#!topic/diybio/yXfghy7a7wc

http://www.youtube.com/watch?v=mOgTVx9ge5M&feature=player_embedded

http://www.youtube.com/user/basementbiotech

http://www.youtube.com/watch?v=odxvp-3nSw4

Success in Science in 16 minutes: http://www.youtube.com/watch?v=r0vBS0oC8aM

Favorites

Favorite things of all kinds:

Bioinformatics blogs:

http://www.homolog.us/blogs/

To read

Composability of regulatory sequences controlling transcription and translation in E. coli.

@@ Line 13: / Line 13: @@
 ==Notes==
-===0-9===
-[[User:Jarle Pahr/13C|13C]]
+See [[User:Jarle Pahr/Notes|Notes]]
-[[User:Jarle Pahr/16S_RNA|16S RNA]]
+==Projects==
-===A===
+[[User:Jarle Pahr/Notebook/ppGpp Msc|ppGpp MSc. project]]
-[[User:Jarle Pahr/Algae|Algae]]
+==Organisms==
-[[User:Jarle Pahr/Alginate|Alginate]]
-[[User:Jarle Pahr/Algorithms|Algorithms]]
+See [[User:Jarle Pahr/Organisms|Organisms]]
-[[User:Jarle Pahr/Allpaths|Allpaths]]
+==Interesting articles==
+[http://www.ncbi.nlm.nih.gov/pubmed/21847113 Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen]
-[[User:Jarle Pahr/Android|Android]]
+[http://www.ncbi.nlm.nih.gov/pubmed/16330045 Environmentally controlled invasion of cancer cells by engineered bacteria]
-[[User:Jarle Pahr/Annotation|Annotation]]
+[http://www.ncbi.nlm.nih.gov/pubmed/18263722 Dual role of lldR in regulation of the lldPRD operon, involved in L-lactate metabolism in E. coli]
-[[User:Jarle Pahr/Articles|Articles]]
+[http://www.cell.com/abstract/S0092-8674%2812%2900776-3 A Whole-Cell Computational Model Predicts Phenotype from Genotype]
-[[User:Jarle Pahr/Article_reviews|Article reviews]]
+[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11516.html Genetic programs constructed from layered logic gates in single cells]
-[[User:Jarle Pahr/Automation|Automation]]
+==Research centres/labs==
-[[User:Jarle Pahr/Applications|Apps]]
+Wyss institute: http://wyss.harvard.edu/
-[[User:Jarle Pahr/Alignment|Alignment]]
+Laboratory for Molecular Infection Medicine Sweden - Umeå: http://www.mims.umu.se/
-[[User:Jarle Pahr/Arduino|Arduino]]
+Cold Spring Harbor Laboratory: http://www.cshl.edu/
-[[User:Jarle Pahr/Assembly|Assembly]]
+Wellcome Trust Sanger Institute: http://www.sanger.ac.uk/
-[[User:Jarle Pahr/Annotation|Annotation]]
+Insititute for Systems Biology: https://www.systemsbiology.org
-[[User:Jarle Pahr/Antibiotics|Antibiotics]]
+Virginia Bioinformatics Institute: https://www.vbi.vt.edu/
-[[User:Jarle Pahr/AWS|AWS]]
+European Bioinformatics Institute: http://www.ebi.ac.uk/
-===B===
+ATCC: http://www.lgcstandards-atcc.org/
-[[User:Jarle Pahr/BAM|BAM]]
+European Molecular Biology Laboratory (EMBL): http://www.embl.de/
-[[User:Jarle Pahr/Beer|Beer]]
+http://www.leukippos.org/Leukippos_Institute/Leukippos_Institute_News.html
-[[User:Jarle Pahr/BGI|BGI]]
-[[User:Jarle Pahr/Bibliometry|Bibliometry]]
+http://unitedscientists.org/labs/norway/NTNU/PhotoSynLab/
-[[User:Jarle Pahr/Biohacking|Biohacking]]
+http://korflab.ucdavis.edu/
-[[User:Jarle Pahr/Biology|Biology]]
+==Research programs/projects==
-[[User:Jarle Pahr/Biosensors|Biosensors]]
+Statseq: http://www2.ab.wur.nl/statseq/
-[[User:Jarle Pahr/BioBricks|BioBricks]]
+==Online learning==
-[[User:Jarle Pahr/Bioconductor|BioConductor]]
+https://www.coursera.org/course/usefulgenetics
-[[User:Jarle Pahr/Biofilms|Biofilms]]
+http://www.skillshare.com/
-[[User:Jarle Pahr/Biofuel|Biofuel]]
+'''Portals:'''
-[[User:Jarle Pahr/Biopython|BioPython]]
+Saylor: http://www.saylor.org/majors/biology/
-[[User:Jarle Pahr/BioStars|BioStars]]
+http://www.class-central.com/
-[[User:Jarle Pahr/Biocurious|Biocurious]]
+http://www.core.org.cn
-[[User:Jarle Pahr/Big_data|Big data]]
+https://www.coursera.org/
-[[User:Jarle Pahr/BWA|Burrows-Wheeler Aligner]]
+MIT Open Courseware: http://ocw.mit.edu/index.htm
-[[User:Jarle Pahr/BWT|Burrows-Wheeler Transform]]
+Udacity:https://www.udacity.com/
-[[User:Jarle Pahr/Biological_computation|Biological computation]]
+EdX: https://www.edx.org/courses
-[[User:Jarle Pahr/Bioprospecting|Bioprospecting]]
+Khan academy: https://www.khanacademy.org
-[[User:Jarle Pahr/Bioinformatics|Bioinformatics]]
+http://www.bioinformatics.org/edu/course/
-[[User:Jarle Pahr/BOW|Bioinformatics on Windows]]
+'''Specific courses:'''
-[[User:Jarle Pahr/Bowtie|Bowtie]]
+Computational investing course: https://www.coursera.org/course/compinvesting1
-[[User:Jarle Pahr/Bitesize|Bitesize Biology]]
+Linear and discrete optimization course: https://www.coursera.org/course/linearopt
-[[User:Jarpe Pahr/BAMBI|BAMBI]]
+https://www.coursera.org/course/macroeconomics
-[[User:Jarpe Pahr/BAMBI#BAMBI-LAST|BAMBI-LAST]]
+Bioinformatics algorithms: https://www.coursera.org/course/bioinformatics
-[[User:Jarpe Pahr/BAMBI#BAMBI-FAST|BAMBI-FAST]]
+Financial Engineering: https://www.coursera.org/course/fe
-[[User:Jarle Pahr/BAMTools|BAMTools]]
+A beginner's guide to irrational behavior: https://www.coursera.org/course/behavioralecon
-[[User:Jarle Pahr/BLASR|BLASR]]
+Computational molecular evolution: https://www.coursera.org/course/molevol
-[[User:Jarle Pahr/BLAST|BLAST]]
+https://www.coursera.org/course/netsysbio
-[[User:Jarle Pahr/BLAT|BLAT]]
+Introduction to Systems Biology: https://www.coursera.org/course/sysbio
-[[User:Jarle Pahr/Blogs|Blogs]]
+Biostatistics bootcamp: https://www.coursera.org/course/biostats
-[[User:Jarle Pahr/Books|Books]]
+High performance scientific computing: https://www.coursera.org/course/scicomp
-[[User:Jarle Pahr/BPDR|BPDR]]
+==Language==
-[[User:Jarle Pahr/Bistability|Bistability]]
-[[User:Jarle Pahr/Buffers|Buffers]]
+===Chinese===
-[[User:Jarle Pahr/Business|Business]]
+http://english.cntv.cn/learnchinese/
+http://popupchinese.com/
-[[User:Jarle Pahr/Curation|Biocuration]]
+http://www.sinosplice.com/
-===C===
+http://www.clearchinese.com/learn-chinese
+http://www.instantspeakchinese.com/
-[[User:Jarle Pahr/CAD|Computer Aided Design]]
+"The 5 stages of learning chinese:" http://www.sinosplice.com/learn-chinese/stages-to-learning-chinese
-[[User:Jarle Pahr/CAM|Computer Aided Manufacturing]]
+Courses:
-[[User:Jarle Pahr/COBRA|COBRA]]
+http://www.languageinfusion.no/kinesiskonline.php?gclid=CNfCsP_N3LYCFc5a3godPh0ATQ
-[[User:Jarle Pahr/Copasi|COPASI]]
+http://www.learn-mandarin-help.com/software-to-learn-chinese.html
-[[User:Jarle Pahr/Cancer|Cancer]]
+http://www.rocketlanguages.com/chinese/premium/index.php?hop=jon1573
-[[User:Jarle Pahr/Cell_Designer|Cell Designer]]
+http://chinesepod.com/
-[[User:Jarle Pahr/Chemistry|Chemistry]]
+http://www.sinosplice.com/learn-chinese/an-insiders-look-at-chinesepod
-[[User:Jarle Pahr/Chromosomal_integration|Chromosomal integration]]
+http://store.instantimmersion.com/chinese.html
-[[User:Jarle Pahr/Calculations|Calculations]]
+http://www.fluenz.com/languages/mandarin/learn-mandarin/
-[[User:Jarle Pahr/Centrifugation|Centrifugation]]
+http://www.pimsleur.com/learn-mandarin-chinese
-[[User:Jarle Pahr/Characterising|Characterising]]
+http://www.learn-mandarin-help.com/rosetta-stone-mandarin.html
-[[User:Jarle Pahr/Chassis|Chassis]]
+http://www.amazon.com/Rosetta-Stone-Chinese-Mandarin-Level/dp/1608299643
-[[User:Jarle Pahr/Checklists|Checklists]]
+http://www.rosettastone.eu/lp/brand/?cid=se-ggeu1b13&rd=0
-[[User:Jarle Pahr/Chemicals|Chemicals]]
+http://www.learn-mandarin-help.com/
-[[User:Jarle Pahr/CitedNotRead|CitedNotRead]]
+http://www.fsi-language-courses.org/Content.php
-[[User:Jarle Pahr/CNC|CNC]]
+Foreign Service Institute language courses - Standard Chinese, a modular approach: http://www.fsi-language-courses.org/Content.php?page=Chinese
-[[User:Jarle Pahr/CNS|Cell Nature Science]]
+http://ocw.mit.edu/courses/foreign-languages-and-literatures/21f-101-chinese-i-regular-spring-2006/
-[[User:Jarle Pahr/Companies|Companies]]
-[[User:Jarle Pahr/Competent_cells|Competent cells]]
-[[User:Jarle Pahr/Competitions|Competitions]]
+Books:
-[[User:Jarle Pahr/Conferences|Conferences]]
-[[User:Jarle Pahr/Contamination|Contamination]]
+http://www.amazon.com/gp/product/7800521346/ref=cm_cr_asin_lnk
-[[User:Jarle Pahr/Costs|Costs]]
+New Practical Chinese Reader Textbook 1: http://www.amazon.com/New-Practical-Chinese-Reader-Textbook/dp/7561910401
-[[User:Jarle Pahr/Cloning|Cloning]]
+New Practical Chinese Reader series: http://www.sinoliterature.co.uk/english/index.aspx?category=68&gclid=CO2pyuLB3LYCFcNQ3god_CgAHg
-[[User:Jarle Pahr/Cloud_computing|Cloud computing]]
+Reading/Writing:
-[[User:Jarle Pahr/Computation|Computation]]
+http://www.amazon.com/Reading-Writing-Chinese-Simplified-Character/dp/0804835098/ref=cm_cr-mr-title
-[[User:Jarle Pahr/Colicins|Colicins]]
+http://www.quickmandarin.com/chinesepinyintable/
-[[User:Jarle Pahr/Commerce|Commerce]]
+Dictionaries:
-[[User:Jarle Pahr/Courses|Courses]]
+http://www.nciku.com/
-[[User:Jarle Pahr/Control_theory|Control theory]]
+http://www.zhongwen.com/
-[[User:Jarle Pahr/Cufflinks|Cufflinks]]
-[[User:Jarle Pahr/Cytoscape|Cytoscape]]
+Speaking:
-===D===
+SpeakGoodChinese: http://www.speakgoodchinese.org/
-[[User:Jarle Pahr/Data|Data]]
+==Synthetic Biology==
-[[User:Jarle Pahr/Data_analysis|Data analysis]]
+See [[User:Jarle Pahr/Synthetic_biology|Synthetic Biology]]
-[[User:Jarle Pahr/Data_mining|Data mining]]
+==Biological part collections==
-[[User:Jarle Pahr/Databases|Databases]]
+http://partsregistry.org
-[[User:Jarle Pahr/dbSNP|dbSNP]]
+https://biobricks.org/bpa/find-a-part/
-[[User:Jarle Pahr/de_Bruijn_graphs|de Bruijn graphs]]
+https://registry.synberc.org/
-[[User:Jarle Pahr/Degradation_tags|Degradation tags]]
+https://public-registry.jbei.org/ (http://www.ncbi.nlm.nih.gov/pubmed/22718978)
-[[User:Jarle Pahr/DNA|DNA]]
+==DIY Bio/Citizen science==
-[[User:Jarle Pahr/DNA_analysis|DNA analysis]]
-[[User:Jarle Pahr/DNA_assembly|DNA assembly]]
+See [[User:Jarle Pahr/DIYBio|DIY Bio]]
-[[User:Jarle Pahr/DNA_polymerase|DNA polymerase]]
+http://citizensciencequarterly.com/
-[[User:Jarle Pahr/Discovar|Discovar]]
+==Art and Strategy==
-[[User:Jarle Pahr/DIYBio|DIY Bio]]
+http://biocouture.co.uk/about/
-===E===
+Xenotext: http://www.law.ed.ac.uk/ahrc/script-ed/vol5-2/editorial.asp
-[[User:Jarle Pahr/Education|Education]]
+http://en.wikipedia.org/wiki/Christian_B%C3%B6k#The_Xenotext_experiment
-[[User:Jarle Pahr/Electrophoresis|Electrophoresis]]
+http://www.instructables.com/id/Twitter-Mood-Light-The-Worlds-Mood-in-a-Box/
-[[User:Jarle Pahr/Electronics|Electronics]]
+http://blog.arduino.cc/2013/05/19/the-mood-lamp-recognizes-your-facial-expressions-and-turns-them-into-light/?utm_source=buffer&utm_medium=facebook&utm_campaign=Buffer&utm_content=buffer7d04e
-[[User:Jarle Pahr/ELN|ELN]]
+http://thefinchandpea.com/2010/06/20/what-the-end-of-the-world-says-about-science/
-[[User:Jarle Pahr/Emboss|EMBOSS]]
+http://thefinchandpea.com/2013/08/04/sunday-poem-lord-byrons-post-apocalyptic-vision/
-[[User:Jarle Pahr/Epigenetics|Epigenetics]]
+==Personal genomics==
-[[User:Jarle Pahr/Errors|Errors]]
+https://www.23andme.com/
-[[User:Jarle Pahr/eQTL|expression Quantiative Trait Loci]]
+http://www.23andyou.com
-[[User:Jarle Pahr/ERP|Enterprise Resource Planning]]
+http://www.genomesunzipped.org/
-[[User:Jarle Pahr/Euler|EULER]]
+uBiome - sequencing your microbiome: http://www.indiegogo.com/projects/ubiome-sequencing-your-microbiome
-[[User:Jarle Pahr/Ethics|Ethics]]
+http://www.personalgenomes.org/
-[[User:Jarle Pahr/Experiments|Experiments]]
+==Companies==
-[[User:Jarle Pahr/Experimental_design|Experimental design]]
+Evolutionary Solutions: http://www.evosol.co/
-[[User:Jarle Pahr/Expression|Expression]]
+http://www.allelebiotech.com/allele3/index.php
-[[User:Jarle Pahr/Exome_sequencing|Exome_sequening]]
+Era7: http://era7bioinformatics.com/en/index.cfm
-[[User:Jarle Pahr/Equipment|Equipment]]
+DNA electronics: http://dnae.co.uk/
-[[User:Jarle Pahr/Evolution|Evolution]]
+Genome Compiler: http://www.genomecompiler.com/
-[[User:Jarle Pahr/E_coli|E. coli]]
+http://www.strandls.com
-===F===
+http://www.novozymes.com/en/Pages/default.aspx
-[[User:Jarle Pahr/Fame|FAME]]
+http://www.genabler.com
-[[User:Jarle Pahr/Favorites|Favorites]]
+http://www.syntheticgenomics.com/
-[[User:Jarle Pahr/FFL|Feed-Forward Loops]]
+BGI: http://www.genomics.cn/en/index
-[[User:Jarle Pahr/Food|Food]]
+Gen9: http://gen9bio.com/
-[[User:Jarle Pahr/Forums|Forums]]
+DNA 2.0: https://www.dna20.com
-[[User:Jarle Pahr/FRET|FRET]]
+Integrated DNA Technologies (IDT): http://eu.idtdna.com/site
-[[User:Jarle Pahr/Forensics|Forensics]]
+GenScript: http://www.genscript.com/
-[[User:Jarle Pahr/Future_products|Future products]]
+Desktop Genetics: http://www.deskgen.com
-[[User:Jarle Pahr/Flow_cytometry|Flow cytometry]]
+Ginkgo Bioworks: http://ginkgobioworks.com/
-[[User:Jarle Pahr/Fluxomics|Fluxomics]]
+Biofab: http://www.biofab.org/
-[[User:Jarle Pahr/FBA|Flux Balance Analysis]]
+http://www.knome.com/
-===G===
+http://www.nucleics.com/
-[[User:Jarle Pahr/Galaxy|Galaxy]]
+https://www.transcriptic.com/
-[[User:Jarle Pahr/GATK|GATK]]
+Cambrian Genomics:
+https://angel.co/cambrian-genomics
+http://cambriangenomics.com/
-[[User:Jarle Pahr/Games|Games]]
+http://www.genologics.com
-[[User:Jarle Pahr/GenBank|GenBank]]
+==Suppliers==
-[[User:Jarle Pahr/Genes|Genes]]
+http://store.p212121.com/
-[[User:Jarle Pahr/Gene_deletion|Gene deletion]]
+http://www.biosciencetools.com/
-[[User:Jarle Pahr/Genetic_circuits|Genetic circuits]]
+http://www.laboratory-journal.com/
-[[User:Jarle Pahr/GRN|Gene regulatory networks]]
+www.labx.com
-[[User:Jarle Pahr/Gene_therapy|Gene therapy]]
+http://www.oxfordgenetics.co.uk/
-[[User:Jarle Pahr/Genetic_engineering|Genetic engineering]]
+BioBasic: http://store.biobasic.com/
-[[User:Jarle Pahr/Genomes|Genomes]]
+Promega: http://no.promega.com/
-[[User:Jarle Pahr/Genome_compiler|Genome compiler]]
+Qiagen: http://www.qiagen.com/
-[[User:Jarle Pahr/Genome_browsers|Genom browsers]]
+DongSheng Biotech: http://dongshengbio.com/en/index.asp
-[[User:Jarle Pahr/Genomics|Genomics]]
+Macrogen Inc.: http://www.macrogen.com/eng/index/
-[[User:Jarle Pahr/GLF|Genotype Likelihood Format]]
+Carolina Biological: http://www.carolina.com/
-[[User:Jarle Pahr/Graphics|Graphics]]
+Epoch Life Sciences: http://www.epochlifescience.com/Default.aspx
-[[User:Jarle Pahr/Gurobi|Gurobi]]
+http://www.hometrainingtools.com/
-[[User:Jarle Pahr/GWAS|Genome Wide Association Studies]]
+http://www.labsupplymall.com/
-[[User:Jarle Pahr/GMO|GMO]]
+United Nuclear: http://www.unitednuclear.com/
-[[User:Jarle Pahr/GFP|GFP]]
+New England Biolabs: www.neb.com
-[[User:Jarle Pahr/Git|Git]]
+Elemental Scientific: http://www.elementalscientific.net/store/Scripts/default.asp
-[[User:Jarle Pahr/Genetics|Genetics]]
+Jena BioScience: http://www.jenabioscience.com/
-[[User:Jarle Pahr/GATK|GATK]]
+http://www.synthesisgene.com/
-[[User:Jarle Pahr/Genealogy|Genealogy]]
+Thermo scientific: http://www.thermoscientific.com/ecomm/servlet/home?storeId=11152
-[[User:Jarle Pahr/Graph_theory|Graph theory]]
+http://www.millipore.com/index.do
-[[User:Jarle Pahr/Growth_media|Growth media]]
+See also http://www.made-in-china.com/
-[[User:Jarle Pahr/GWAS|GWAS]]
+Open Biotechnology: http://www.openbiotech.com/
-===H===
+http://www.metabion.com/home/index.php
-[[User:Jarle Pahr/Hadoop|Hadoop]]
+http://bostonbioproducts.com/
-[[User:Jarle Pahr/Hackerspaces|Hackerspaces]]
+http://www.sbsbio.com/english/dnahc.html
-[[User:Jarle Pahr/Hardware|Hardware]]
+http://www.interfarm.no/produkter/
-[[User:Jarle Pahr/Hardware|Health]]
+http://www.iorodeo.com/
-[[User:Jarle Pahr/HTS|High Throughput Sequencing]]
+'''Used equipment vendors:'''
-[[User:Jarle Pahr/HSL|Homoserine lactones]]
+http://www.labrecyclers.com/index.html
-[[User:Jarle Pahr/History_of_science|History of science]]
+==Useful links==
+*[[OpenWetWare:Welcome|Introductory tutorial]]
+*[[Help|OpenWetWare help pages]]
-===I===
-[[User:Jarle Pahr/Ideas|Ideas]]
+===Conferences and meetings===
-[[User:Jarle Pahr/IRC|IRC]]
-[[User:Jarle Pahr/IGV|IGV]]
-[[User:Jarle Pahr/Isaac|Isaac]]
+See [[User:Jarle Pahr/Conferences|Conferences]]
-[[User:Jarle Pahr/iGEM|iGEM]]
+===Scientific challenges and competitions===
-[[User:Jarle Pahr/in vitro|in vitro]]
+CAGI - Critical Assesment of Genome Information: https://genomeinterpretation.org/
-[[User:Jarle Pahr/Industrial_ecology|Industrial ecology]]
+Assemblathon
-[[User:Jarle Pahr/Isolation|Isolation]]
+Variathon: http://bioinf.dimi.uniud.it/variathon
-[[User:Jarle Pahr/Invisibility|Invisibility]]
+Alignathon
-[[User:Jarle Pahr/Instructables|Instructables]]
+Sequence squeeze: http://www.sequencesqueeze.org/
-[[User:Jarle Pahr/Image_analysis|Image analysis]]
+===Resources for researchers===
-===K===
+http://www.protocol-online.org/science-forums-2/Dissertation-and-Paper-Writing/
-[[User:Jarle Pahr/Kits|Kits]]
+http://www.protocol-online.org/science-forums-2/Career-Advice/
+https://www.researchgate.net
-[[User:Jarle Pahr/Khmer|Khmer]]
+http://friendfeed.com/the-life-scientists
-===L===
+http://nigerianbioscientist.com/
-[[User:Jarle Pahr/Law|Law]]
+===Educational resources===
+http://www.bioinformatics.nl/molbi/SimpleCloningLab/index.htm
-[[User:Jarle Pahr/LIMS|LIMS]]
+ROSALIND Bioinformatics challenges: http://rosalind.info/problems/locations/
-[[User:Jarle Pahr/LAST|LAST]]
+Project Euler: http://projecteuler.net/
-[[User:Jarle Pahr/Lean|Lean]]
+AddGene molecular biology reference: http://www.addgene.org/mol_bio_reference/
-[[User:Jarle Pahr/Laboratory_software|Laboratory software]]
+https://www.manylabs.org/
-[[User:Jarle Pahr/LIC|LIC]]
+http://www.dnalabbook.co.uk/
-[[User:Jarle Pahr/Language|Language]]
+=Wiki sites=
-[[User:Jarle Pahr/LaTeX|LaTeX]]
+http://www.scholarpedia.org
-[[User:Jarle Pahr/lablessons|Lab lessons]]
+SNPedia.com
-[[User:Jarle Pahr/Lac_operon|Lac operon]]
+http://www.wikigenes.org
-[[User:Jarle Pahr/Lean|Lean]]
+http://ecoliwiki.net
-[[User:Jarle Pahr/Lux|Lux operon]]
+http://www.phylocommons.org/
-[[User:Jarle Pahr/Ligation|Ligation]]
+===Discussion and communities===
-[[User:Jarle Pahr/Liquid_handling|Liquid handling]]
+===Apps===
-===M===
+mPartsregistry: http://mpartsregistry.appspot.com
-[[User:Jarle Pahr/Mapreduce|MapReduce]]
+===Persons/Research groups===
-[[User:Jarle Pahr/Metabolic_engineering|Metabolic engineering]]
+http://genefish.wikispaces.com/
-[[User:Jarle Pahr/Metabolic_modelling|Metabolic modelling]]
+Mark Pallen: http://www2.warwick.ac.uk/fac/med/research/microinfect/staff/pallengroup/
-[[User:Jarle Pahr/Mobile_tools|Mobile tools]]
+Chris Anderson lab: https://andersonlab.qb3.berkeley.edu/
-[[User:Jarle Pahr/Microfluidics|Microfluidics]]
+Magni Paolo: http://www.labmedinfo.org/people/magni
-[[User:Jarle Pahr/MAQ|MAQ]]
+http://www.rpgroup.caltech.edu/publications/
-[[User:Jarle Pahr/Microplates|Microplates]]
+Heng Li. "Alignment God".
-[[User:Jarle Pahr/Medicine|Medicine]]
+Dworkin lab: https://www.msu.edu/~idworkin/publications.html
-[[User:Jarle Pahr/Metabolic_burden|Metabolic burden]]
+Titus Brown:
-[[User:Jarle Pahr/MOOC|Massive Open Online Courses]]
+Erlich lab: http://erlichlab.wi.mit.edu/index.html
-[[User:Jarle Pahr/MFA|Metabolic flux analysis]]
+Cristopher mason: http://www.masonlab.net/
-[[User:Jarle Pahr/Mutations|Mutations]]
+http://openwetware.org/wiki/User:Vincent
-[[User:Jarle Pahr/Microscopy|Microscopy]]
+Markus Gershater
-[[User:Jarle Pahr/Models|Models]]
+http://www.princeton.edu/~ajlgroup/
-[[User:Jarle Pahr/Miniexperiments|Miniexperiments]]
+Heng Li
-[[User:Jarle Pahr/Modelling|Modelling]]
+Michael Cashel: https://science.nichd.nih.gov/confluence/display/pgd/Michael+Cashel+Lab
-[[User:Jarle Pahr/Motifs|Network motifs]]
+Jim Collins: http://www.bu.edu/abl/
-[[User:Jarle Pahr/Microbiology|Microbiology]]
+Jason Kelly: http://openwetware.org/wiki/Jason_Kelly
-===N===
+Tom Ellis: http://openwetware.org/wiki/User:Ellis
-[[User:Jarle Pahr/Nested_feedback_loops|Nested feedback loops]]
+George Church: http://arep.med.harvard.edu/gmc/
-[[User:Jarle Pahr/Nanopore|Nanopore]]
+Jay Keasling: http://keaslinglab.lbl.gov/research_areas/index.html
-[[User:Jarle Pahr/Networks|Networks]]
+Chris Voigt
-[[User:Jarle Pahr/Nutrition|Nutrition]]
+Bernahrd Ø Pallsson: http://gcrg.ucsd.edu/Researchers/Palsson
-[[User:Jarle Pahr/Negative_results|Negative results]]
+Tom Knight
-[[User:Jarle Pahr/Neuroscience|Neuroscience]]
+Joe Felsenstein: http://www.gs.washington.edu/faculty/felsenstein.htm
+*Professor of Genome Sciences and Biology, University of Washington.
-[[User:Jarle Pahr/NMR|NMR]]
+Drew Endy: http://openwetware.org/wiki/User:Endy
-[[User:Jarle Pahr/Noise|Noise]]
+Densmore lab: http://people.bu.edu/dougd/research.html
-===O===
+Ron Weiss: http://groups.csail.mit.edu/synbio/people/professor-ron-weiss/
-[[User:Jarle Pahr/Organisms|Organisms]]
+Jean Peccoud
-[[User:Jarle Pahr/OMIM|OMIM]]
+Jonathan Eisen
-[[User:Jarle Pahr/Oscillation|Oscillation]]
+Martin Fusenegger
-[[User:Jarle Pahr/Ontologies|Ontologies]]
+Pamela Silver
-[[User:Jarle Pahr/OGE|Open Genomics Engine]]
+Rob Carlson
-[[User:Jarle Pahr/Openwetware|OpenWetWare]]
+Ethan Perlstein: http://www.perlsteinlab.com/
-[[User:Jarle Pahr/OpenWorm|OpenWorm]]
+Anthony Evans
-[[User:Jarle Pahr/Optimization|Optimization]]
+Nick Loman:
-[[User:Jarle Pahr/Optogenetics|Optogenetics]]
+http://pathogenomics.bham.ac.uk/clinicogenomics/
-[[User:Jarle Pahr/Oligonucleotides|Oligonucleotides]]
+http://pathogenomics.bham.ac.uk/blog/author/nick/
-[[User:Jarle Pahr/Open_science|Open science]]
+Titus Brown: http://ivory.idyll.org/blog/category/science.html
-[[User:Jarle Pahr/Open_source|Open source]]
+Lex Nedebragt:
-===P===
+http://contig.wordpress.com/
-[[User:Jarle Pahr/Pathogens|Pathogens]]
+https://twitter.com/lexnederbragt
-[[User:Jarle Pahr/Pathways|Pathways]]
+Manual Corpas:
-[[User:Jarle Pahr/People|People]]
+Barry L Wanner: https://www.bio.purdue.edu/molecular_biosciences/directory.php?refID=30
+*Made many E. coli strains.
-[[User:Jarle Pahr/Performance|Performance]]
+Andrew Hessel: http://andrewhessel.com/
-[[User:Jarle Pahr/Peccoud|Peccoud]]
+===Societies and associations===
-[[User:Jarle Pahr/Phyre|Phyre]]
+Society for applied microbiology: http://www.sfam.org.uk/
-[[User:Jarle Pahr/Phred|Phred]]
+American Association for Clinical Chemistry : http://www.aacc.org/Pages/default.aspx
-[[User:Jarle Pahr/Photosynthesis|Photosynthesis]]
+Royal Society of Chemistry: http://www.rsc.org/
-[[User:Jarle Pahr/Phenotype_switching|Phenotype switching]]
+Society for general microbiology: http://www.sgm.ac.uk/
-[[User:Jarle Pahr/Philosophy|Philosophy]]
+American society for microbiology: http://www.asm.org/
-[[User:Jarle Pahr/PID|PID]]
+Norsk Kjemisk selskap: http://www.kjemi.no/
-[[User:Jarle Pahr/Plink|Plink]]
+International Society for Systems Biology: http://www.issb.org/
-[[User:Jarle Pahr/Pipetting|Pipetting]]
+Genetics Society of America: http://www.genetics-gsa.org/
-[[User:Jarle Pahr/Projects|Projects]]
+British Society for Gene and Cell Therapy: https://www.facebook.com/BSGCT
-[[User:Jarle Pahr/pH|pH]]
+American Society of Human Genetics (ASHG):
-[[User:Jarle Pahr/Patents|Patents]]
+Society for Molecular Biology and Evolution (SMBE): http://www.smbe.org/
-[[User:Jarle Pahr/Persistence|Persistence]]
+===Publications===
-[[User:Jarle Pahr/Petri_nets|Petri nets]]
-[[User:Jarle Pahr/Plasmids|Plasmids]]
-[[User:Jarle Pahr/Phylogenetics|Phylogenetics]]
-[[User:Jarle Pahr/Posters|Posters]]
-[[User:Jarle Pahr/Promoters|Promoters]]
-[[User:Jarle Pahr/Protocols|Protocols]]
-[[User:Jarle Pahr/PCR|PCR]]
-[[User:Jarle Pahr/Programming|Programming]]
-[[User:Jarle Pahr/Python|Python]]
-===R===
-[[User:Jarle Pahr/R|R]]
-[[User:Jarle Pahr/Raspberry_pi|Raspberry pi]]
-[[User:Jarle Pahr/Ray|Ray assembler]]
-[[User:Jarle Pahr/RNA|RNA]]
-[[User:Jarle Pahr/RNAseq|RNAseq]]
-[[User:Jarle Pahr/Refuted|Refuted]]
-[[User:Jarle Pahr/Regulatos|Regulators]]
-[[User:Jarle Pahr/Resources|Resources]]
-[[User:Jarle Pahr/Ribosome|Ribosome]]
-[[User:Jarle Pahr/Riboswitches|Riboswitches]]
-[[User:Jarle Pahr/Robotics|Robotics]]
-[[User:Jarle Pahr/Robustness|Robustness]]
-[[User:Jarle Pahr/Research_tools|Research tools]]
-[[User:Jarle Pahr/Questions|Research questions]]
-[[User:Jarle Pahr/Questionable|Questionable]]
-[[User:Jarle Pahr/Recipes|Recipes]]
-[[User:Jarle Pahr/Restriction|Restriction]]
-[[User:Jarle Pahr/Retractions|Retractions]]
-[[User:Jarle Pahr/RNA|RNA]]
-[[User:Jarle Pahr/RNA_polymerase|RNA polymerase]]
-[[User:Jarle Pahr/RBS|RBS]]
-===S===
-[[User:Jarle Pahr/Sanger|Sanger sequencing]]
-[[User:Jarle Pahr/Safety|Safety]]
-[[User:Jarle Pahr/Search|Search]]
-[[User:Jarle Pahr/Skills|Skills]]
-[[User:Jarle Pahr/Sequencing|Sequencing]]
-[[User:Jarle Pahr/Scientific_computing|Scientific computing]]
-[[User:Jarle Pahr/SLIC|SLIC]]
-[[User:Jarle Pahr/Slides|Slides]]
-[[User:Jarle Pahr/Stampy|Stampy]]
-[[User:Jarle Pahr/SMRT|SMRT]]
-[[User:Jarle Pahr/SNP|SNP]]
-[[User:Jarle Pahr/SOAP|SOAP]]
-[[User:Jarle Pahr/Spades|Spades]]
-[[User:Jarle Pahr/Storage|Storage]]
-[[User:Jarle Pahr/Single_cell|Single cell technologies]]
-[[User:Jarle Pahr/Social_web|Social web]]
-[[User:Jarle Pahr/Scientific_computing|Scientific computing]]
-[[User:Jarle Pahr/Software|Software]]
-[[User:Jarle Pahr/Stringent_response|Stringent response]]
-[[User:Jarle Pahr/SAM|SAM]]
-[[User:Jarle Pahr/SWA|SWA]]
-[[User:Jarle Pahr/SGA|SGA]]
-[[User:Jarle Pahr/SAMTools|SAMTools]]
-[[User:Jarle Pahr/Statistics|Statistics]]
-[[User:Jarle Pahr/Stocks|Stocks]]
-[[User:Jarle Pahr/Strains|Strains]]
-[[User:Jarle Pahr/Sterilization|Sterilization]]
-[[User:Jarle Pahr/SVM|Support Vector Machines]]
-[[User:Jarle Pahr/Synthetic_biology|Synthetic Biology]]
-[[User:Jarle Pahr/Systems_biology|Systems Biology]]
-[[User:Jarle Pahr/Simulations|Simulations]]
-===T===
-[[User:Jarle Pahr/Taxonomy|Taxonomy]]
-[[User:Jarle Pahr/Technobabble|Technobabble]]
-[[User:Jarle Pahr/Terminators|Terminators]]
-[[User:Jarle Pahr/Transformation|Transformation]]
-[[User:Jarle Pahr/Transcription|Transcription]]
-[[User:Jarle Pahr/Translation|Translation]]
-[[User:Jarle Pahr/Transposons|Transposons]]
-[[User:Jarle Pahr/Theses|Theses]]
-[[User:Jarle Pahr/Theses|Tutorials]]
-[[User:Jarle Pahr/Turbidimetry|Turbidimetry]]
-[[User:Jarle Pahr/Trinity|Trinity]]
-===V===
-[[User:Jarle Pahr/Variant_calling|Variant calling]]
-[[User:Jarle Pahr/Vectors|Vectors]]
-[[User:Jarle Pahr/Velvet|Velvet]]
-[[User:Jarle Pahr/Venter|Venter]]
-[[User:Jarle Pahr/VCF|VCF]]
-[[User:Jarle Pahr/Verification|Verification]]
-[[User:Jarle Pahr/Version control|Version control]]
-===W===
-[[User:Jarle Pahr/Writing|Writing]]
-[[User:Jarle Pahr/Weighing|Weighing]]
-[[User:Jarle Pahr/Wisdom|Wisdom]]
-[[User:Jarle Pahr/Wine|Wine]]
-[[User:Jarle Pahr/Whateverhappenedto|Whateverhappenedto]]
-[[User:Jarle Pahr/Work|Work]]
-[[User:Jarle Pahr/Workflows|Workflows]]
-===Y===
-[[User:Jarle Pahr/Yeast|Yeast]]
-[[User:Jarle Pahr/Yoghurt|Yoghurt]]
-'''Genes/molecules:'''
+{| class="wikitable" border="1" cellpadding="5" cellspacing="0"
+|-
+! Journal name!! Publisher !! Open access status !! Link
+|-
+| ACS Synthetic Biology || American Chemical Society ||No ||  http://pubs.acs.org/journal/asbcd6
+|-
+| Bioengineered (Previously: Bioengineered bugs) || Landes Bioscience ||Partial ||http://dev.landesbioscience.com/journals/bioe/
+|-
+|Bioinformatics||Oxford Journals|| ||http://bioinformatics.oxfordjournals.org/
+|-
+|Biology Open||Company of Biologists||Yes||http://bio.biologists.org/
+|-
+|BMC Medical Genomics||BMC||Yes||http://www.biomedcentral.com/bmcmedgenomics/
+|-
+|BMC Proceedings||BMC||Yes||http://www.biomedcentral.com/bmcproc
+|-
+| PLOS One  ||Public Library of Science || Yes ||http://www.plosone.org/
+|-
+| Nucleic Acids Research|| Oxford Journals || Yes || http://nar.oxfordjournals.org/
+|-
+|BMC Systems Biology||BioMedCentral||Yes||http://www.biomedcentral.com/bmcsystbiol/
+|-
+|BMC Microbiology||BioMedCentral||Yes||http://www.biomedcentral.com/bmcmicrobiol
+|-
+|Cell||Cell Press|| ||http://www.cell.com/
+|-
+|Cell Reports||Cell Press ||Yes||http://cellreports.cell.com/
+|-
+|The EMBO Journal||Nature Publishing Group ||No||http://www.nature.com/emboj/index.html
+|-
+|Frontiers in Synthetic Biology||Nature Publishing Group|| ||http://www.frontiersin.org/Synthetic_Biology/about
+|-
+|Genetics||Genetics Society of America|| ||http://www.genetics.org/
+|-
+|G3: Genes, Genomes, Genetics Mission ||Genetics Society of America|| ||http://www.g3journal.org/
+|-
+|Genome Research||Cold Spring Harbor Press||Partial (6 month embargo)|| http://genome.cshlp.org/
+|-
+|Genome Biology||BMC||Yes||http://genomebiology.com/
+|-
+|Genome Medicine||BioMedCentral||Yes||http://genomemedicine.com/
+|-
+|Journal of Experimental Biology||Company of Biologists||http://jeb.biologists.org/
+|-
+|Journal of molecular biology||Elsevier ||Partial||http://www.journals.elsevier.com/journal-of-molecular-biology/
+|-
+|Journal of biological chemistry||American Society for Biochemistry and Molecular Biology.  ||No||http://www.jbc.org/
+|-
+|Journal of bacteriology||American Society for Microbiology ||No||http://jb.asm.org/
+|-
+|Journal of Bioscience and Engineering||  || ||http://www.journals.elsevier.com/journal-of-bioscience-and-bioengineering/
+|-
+|Journal of clinical microbiology||American Society for Microbiology||No||http://jcm.asm.org/
+|-
+|mBio||ASM||Yes||http://mbio.asm.org/
+|-
+|Methods||Elsevier||No||http://www.journals.elsevier.com/methods
+|-
+|Microbiology||SGM/HighWire Press||No||http://mic.sgmjournals.org/
+|-
+|Microbiology and Molecular Biology Reviews (MMBR). Formerly Bacteriology Reviews||ASM|| ||mmbr.asm.org
+|-
+|Metabolic Engineering||Elsevier||Partial||http://www.journals.elsevier.com/metabolic-engineering/
+|-
+|Molecular Systems Biology||EMBO/Nature Publishing Group||Yes||http://www.nature.com/msb/index.html||
+|-
+|PLOS Computational Biology||Public Library of Science||Yes||http://www.ploscompbiol.org/
+|-
+|PLOS Pathogens||PLOS||Yes||http://www.plospathogens.org/
+|-
+|Proceedings of the National Academy of Sciences||National Academy of Sciences||No||http://www.pnas.org/
+|-
+|Protein expression and purification||Elsevier||No||http://www.sciencedirect.com/science/journal/10465928
+|-
+|Genome Announcements||ASM||Yes||http://genomea.asm.org/
+|-
+|Futures||Elsevier||?||http://www.sciencedirect.com/science/journal/00163287
+|-
+|Microbial Cell Factories||BioMedCentral||Yes||http://www.microbialcellfactories.com/
+|-
+|Engineering Studies||Taylor & Francis|| ?||http://www.tandfonline.com/loi/test20
+|-
+|FEMS Microbiology Reviews|| || ||http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291574-6976
+|-
+|Nature Biotechnology||Nature Publishing Group||No||http://www.nature.com/nbt/index.html
+|-
+|Nature Genetics||Nature Publishing group||No||http://www.nature.com/ng/index.html
+|-
+|Plasmid||Elsevier||No||http://www.journals.elsevier.com/plasmid/
+|-
+|Journal of Computational Biology||Liebert Publishing||No||http://www.liebertpub.com/CMB
+|-
+|Trends in Biochemical Sciences||Elsevier|| ||http://www.sciencedirect.com/science/journal/09680004
+|-
+|Trends in Microbiology||Elsevier/Cell Press|| ||http://www.sciencedirect.com/science/journal/0966842X
+|-
+|Molecular Genetics & Genomic Medicine||Wiley||Yes||http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292324-9269
+|-
+|Molecular genetics and genomics||Springer Verlag|| ||http://link.springer.com/journal/438
+|-
+|Biochemistry and Molecular Biology Education||Wiley||No||http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291539-3429
+|-
+|Current opinion in chemical biology||Elsevier|| ||http://www.sciencedirect.com/science/journal/13675931
+|-
+|New England Journal of Medicine||NEJM Group|| ||http://www.nejm.org/
+|-
+|Systems and Synthetic Biology||Springer|| ||http://link.springer.com/journal/11693
+|-
+|Scientific Reports||Nature Publishing Group||Yes||http://www.nature.com/srep/index.html
+|}
-[[User:Jarle Pahr/GreA|GreA]]
-[[User:Jarle Pahr/IraP|IraP]]
+Cold Spring Harbor Perspectives: http://cshperspectives.cshlp.org/
-[[User:Jarle Pahr/DksA|DksA]]
+Computational and Structural Biotechnology Journal
-[[User:Jarle Pahr/RelA|RelA]]
-[[User:Jarle Pahr/SpoT|SpoT]]
+http://www.journalnetwork.org/journals/science-general/citizen-science/citizen-science-innovation.html
-[[User:Jarle Pahr/Fis|Fis]]
+Biotechniques: http://www.biotechniques.com/
-[[User:Jarle Pahr/RpoS|RpoS]]
+https://www.openlibhums.org/
-[[User:Jarle Pahr/LldR|LldR]]
+Current protocols in molecular biology: http://onlinelibrary.wiley.com/book/10.1002/0471142727
-==Projects==
+http://www.g3journal.org/
-[[User:Jarle Pahr/Notebook/ppGpp Msc|ppGpp MSc. project]]
+http://push.cwcon.org/
-==Organisms==
+eLife: http://elife.elifesciences.org/
+https://peerj.com/
-See [[User:Jarle Pahr/Organisms|Organisms]]
+Faculty of 1000: http://f1000.com/
-==Interesting articles==
-[http://www.ncbi.nlm.nih.gov/pubmed/21847113 Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen]
-[http://www.ncbi.nlm.nih.gov/pubmed/16330045 Environmentally controlled invasion of cancer cells by engineered bacteria]
+Social Science Research Network: http://www.ssrn.com/
-[http://www.ncbi.nlm.nih.gov/pubmed/18263722 Dual role of lldR in regulation of the lldPRD operon, involved in L-lactate metabolism in E. coli]
-[http://www.cell.com/abstract/S0092-8674%2812%2900776-3 A Whole-Cell Computational Model Predicts Phenotype from Genotype]
+Open access:
-[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11516.html Genetic programs constructed from layered logic gates in single cells]
+http://en.wikipedia.org/wiki/List_of_open-access_journals
-==Research centres/labs==
+http://scholarlyoa.com/
-Wyss institute: http://wyss.harvard.edu/
+http://www.doaj.org/
-Laboratory for Molecular Infection Medicine Sweden - Umeå: http://www.mims.umu.se/
+http://www.opendoar.org/
-Cold Spring Harbor Laboratory: http://www.cshl.edu/
+http://blogs.scientificamerican.com/guest-blog/2013/04/03/who-killed-the-preprint-and-could-it-make-a-return/
-Wellcome Trust Sanger Institute: http://www.sanger.ac.uk/
+Publication tools:
-Insititute for Systems Biology: https://www.systemsbiology.org
+https://collage.elsevier.com/
-Virginia Bioinformatics Institute: https://www.vbi.vt.edu/
+Reference management / Social bookmarking:
-European Bioinformatics Institute: http://www.ebi.ac.uk/
+http://www.mendeley.com/
-ATCC: http://www.lgcstandards-atcc.org/
+http://www.citeulike.org/
-European Molecular Biology Laboratory (EMBL): http://www.embl.de/
+JabRef reference manager: http://jabref.sourceforge.net/
-http://www.leukippos.org/Leukippos_Institute/Leukippos_Institute_News.html
+===Publishers===
+Springer
-http://unitedscientists.org/labs/norway/NTNU/PhotoSynLab/
+Elsevier
-http://korflab.ucdavis.edu/
+CRC Press
-==Research programs/projects==
+Horizon Press
-Statseq: http://www2.ab.wur.nl/statseq/
+===Databases/Repositories===
-==Online learning==
+PlasmID database: http://plasmid.med.harvard.edu/PLASMID/
-https://www.coursera.org/course/usefulgenetics
+Addgene plasmid repository: http://www.addgene.org/
-http://www.skillshare.com/
+DNASU plasid repository: http://dnasu.asu.edu/DNASU/
-'''Portals:'''
+The Open Construct Database: http://www.the-odin.com
-http://www.class-central.com/
+Bionumbers - [http://bionumbers.hms.harvard.edu/default.aspx The database of useful biological numbers]
-http://www.core.org.cn
+EcoCyc - E. coli K-12 MG1655 database: http://www.ecocyc.org/
-https://www.coursera.org/
+EcoGene: http://www.ecogene.org
-MIT Open Courseware: http://ocw.mit.edu/index.htm
+JWS Online model database: http://jjj.biochem.sun.ac.za/database/
-Udacity:https://www.udacity.com/
+http://systems-biology.org/resources/model-repositories/
-EdX: https://www.edx.org/courses
+Genome-Scale metabolic network database: http://synbio.tju.edu.cn/GSMNDB/gsmndb.htm
-Khan academy: https://www.khanacademy.org
+Array express: http://www.ebi.ac.uk/arrayexpress/
-http://www.bioinformatics.org/edu/course/
+Rebase restriction enzyme database: http://rebase.neb.com/rebase/rebase.html
-'''Specific courses:'''
+genomes project: http://browser.1000genomes.org/index.html
-Computational investing course: https://www.coursera.org/course/compinvesting1
+BRENDA Enzymes: http://www.brenda-enzymes.info/
-Linear and discrete optimization course: https://www.coursera.org/course/linearopt
+KEGG
-https://www.coursera.org/course/macroeconomics
+GenBank
-Bioinformatics algorithms: https://www.coursera.org/course/bioinformatics
+http://datadryad.org/
-Financial Engineering: https://www.coursera.org/course/fe
+http://www.cathdb.info/
-A beginner's guide to irrational behavior: https://www.coursera.org/course/behavioralecon
+===Codon usage===
-Computational molecular evolution: https://www.coursera.org/course/molevol
+http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=83333
-https://www.coursera.org/course/netsysbio
+Codon usage analyzer: http://www.bioinformatics.org/sms2/codon_usage.html
-Introduction to Systems Biology: https://www.coursera.org/course/sysbio
+===Other informational resources===
-Biostatistics bootcamp: https://www.coursera.org/course/biostats
+National Centre for Biotechnology Education: http://www.ncbe.reading.ac.uk/menu.html
-High performance scientific computing: https://www.coursera.org/course/scicomp
+http://seqanswers.com
-==Language==
+NCBI vs EMBL vs DDBJ.: http://lib.bioinfo.pl/courses/view/151
+The DDBJ/EMBL/GenBank Feature Table Definition: http://www.insdc.org/files/feature_table.html#1
-===Chinese===
+http://openwetware.org/wiki/DNA - Contains many protocols
-http://english.cntv.cn/learnchinese/
+Bite Size Bio: http://bitesizebio.com/
-http://popupchinese.com/
+BenchFly: http://www.benchfly.com/
-http://www.sinosplice.com/
+http://biologicalworld.com/protocols.htm
-http://www.clearchinese.com/learn-chinese
+http://www.methods.info/
-http://www.instantspeakchinese.com/
+http://www.biotechdaily.com/
-"The 5 stages of learning chinese:" http://www.sinosplice.com/learn-chinese/stages-to-learning-chinese
+http://www.zenbiology.com/
-Courses:
+http://www.my-whiteboard.com/
-http://www.languageinfusion.no/kinesiskonline.php?gclid=CNfCsP_N3LYCFc5a3godPh0ATQ
+http://lablife.org
-http://www.learn-mandarin-help.com/software-to-learn-chinese.html
+http://www.molbiol-tools.ca/
-http://www.rocketlanguages.com/chinese/premium/index.php?hop=jon1573
+http://www.molecularinfo.com/MTM/MTM.html
-http://chinesepod.com/
+http://www.openhelix.com/ - Genomics and bioinformatics resources.
-http://www.sinosplice.com/learn-chinese/an-insiders-look-at-chinesepod
+===Programming===
-http://store.instantimmersion.com/chinese.html
+BioPython: http://biopython.org/wiki/Main_Page
-http://www.fluenz.com/languages/mandarin/learn-mandarin/
+CodEval -  programming challenges: http://codeeval.com/
-http://www.pimsleur.com/learn-mandarin-chinese
+===Law and ethics===
-http://www.learn-mandarin-help.com/rosetta-stone-mandarin.html
+http://www.genomicslawreport.com/
-http://www.amazon.com/Rosetta-Stone-Chinese-Mandarin-Level/dp/1608299643
+American journal of Bioethics: http://www.tandfonline.com/toc/uajb20/current
-http://www.rosettastone.eu/lp/brand/?cid=se-ggeu1b13&rd=0
+IASB Code of Conduct for best practices in gene synthesis: http://www.ia-sb.eu/go/synthetic-biology/synthetic-biology/code-of-conduct-for-best-practices-in-gene-synthesis/
-http://www.learn-mandarin-help.com/
+IASB - About Biosafety & Security: http://www.ia-sb.eu/go/synthetic-biology/synthetic-biology/biosafety-biosecurity/
-http://www.fsi-language-courses.org/Content.php
+Andrew W Torrance on DNA copyright: http://papers.ssrn.com/sol3/papers.cfm?abstract_id=2017670
-Foreign Service Institute language courses - Standard Chinese, a modular approach: http://www.fsi-language-courses.org/Content.php?page=Chinese
-http://ocw.mit.edu/courses/foreign-languages-and-literatures/21f-101-chinese-i-regular-spring-2006/
+===Cloning===
+SLIC, Gibson, CPEC and SLiCE assembly methods: http://j5.jbei.org/j5manual/pages/22.html
+RF cloning: http://www.rf-cloning.org/QandA.php
-Books:
+PCR Primer design: http://bioweb.uwlax.edu/genweb/molecular/seq_anal/primer_design/primer_design.htm
+PCR: http://www.molbiol-tools.ca/PCR.htm
-http://www.amazon.com/gp/product/7800521346/ref=cm_cr_asin_lnk
+OpenWetWare - designing primers: http://openwetware.org/wiki/Designing_primers
-New Practical Chinese Reader Textbook 1: http://www.amazon.com/New-Practical-Chinese-Reader-Textbook/dp/7561910401
+PCR Guide: http://medicine.yale.edu/labs/henegariu/www/tavi/Guide.html
-New Practical Chinese Reader series: http://www.sinoliterature.co.uk/english/index.aspx?category=68&gclid=CO2pyuLB3LYCFcNQ3god_CgAHg
+PCR troubleshooting: http://medicine.yale.edu/labs/henegariu/www/tavi/Trblesht.html
-Reading/Writing:
+DNA Tm estimation methods: http://openwetware.org/wiki/Primer_Tm_estimation_methods
-http://www.amazon.com/Reading-Writing-Chinese-Simplified-Character/dp/0804835098/ref=cm_cr-mr-title
+DNA stability: http://openwetware.org/wiki/DNA_stability
-http://www.quickmandarin.com/chinesepinyintable/
+E. coli cloning checklist: http://openwetware.org/wiki/Cloning_Checklist
-Dictionaries:
+Guide to Gibson assembly: http://www.synbio.org.uk/dna-assembly/guidetogibsonassembly.html
-http://www.nciku.com/
+Primer design guidelines: http://www.premierbiosoft.com/tech_notes/PCR_Primer_Design.html
-http://www.zhongwen.com/
+===Sequencing===
+Design of sequencing primers: http://seqcore.brcf.med.umich.edu/doc/dnaseq/primers.html
-Speaking:
+Conserved primer sequences for PCR amplification and sequencing from nuclear ribosomal RNA in fungi: http://biology.duke.edu/fungi/mycolab/primers.htm
-SpeakGoodChinese: http://www.speakgoodchinese.org/
+GenScript DNA Sequencing Primers Design Tool: http://www.genscript.com/cgi-bin/tools/sequencing_primer_design
-==Synthetic Biology==
+===Software tools===
-www.synthetic-bestiary.com
+Molecular Biology Freeware for Windows: http://molbiol-tools.ca/molecular_biology_freeware.htm#Graphic%20packages
-http://www.synbioproject.org/
+Molecular Biology & Bioinformatics Resources: http://library.weill.cornell.edu/eresources/molbio.html
-http://www.synbiont.org/
+Bioinformatics Tools and Resources for Biomedical Scientists and Students - http://www.changbioscience.com/virtualab.html
-Competitions and challenges:
-http://igem.org
+DNA copy number calculator: http://www.uri.edu/research/gsc/resources/cndna.html
-http://genocon.org/
+Graphics software:
-http://www.ia-sb.eu/go/synthetic-biology/
+===Systems Biology===
-LabGenius: www.labgeni.us
+http://systems-biology.org/
-http://synbio.org.uk/
+Cytoscape: www.cytoscape.org
-Synthetic Biology timeline: http://www.labgeni.us/synbiotimeline/
+CAIN stochastic simulations for chemical kinetics: http://cain.sourceforge.net/
-Invitrogen synthetic biology webinars: http://www.invitrogen.com/site/us/en/home/Products-and-Services/Applications/synthetic-biology/Synthetic-Biology-Webinars.html
+COBRA Constraints-based modelling toolbox:
-TASBE: A Tool-Chain to Accelerate Synthetic Biological Engineering: http://synthetic-biology.bbn.com/tasbe.html
+CellNetAnalyzer: http://www.mpi-magdeburg.mpg.de/projects/cna/cna.html
-Raytheon BBN Synthetic biology publications: http://synthetic-biology.bbn.com/pubs.html'
+CellDesigner: http://celldesigner.org/
-BBN Synthetic biology tools: https://synbiotools.bbn.com/
+OptFlux: http://www.optflux.org/
-http://www.synberc.org/
+Systems Biology Markup Language: www.sbml.org
-http://www.teselagen.com/
+SBML to LaTex report generator: http://www.cogsys.cs.uni-tuebingen.de/software/SBML2LaTeX/index.html
-==Biological part collections==
+Systems Biology Toolbox 2 for MATLAB: http://www.sbtoolbox2.org/main.php
-http://partsregistry.org
+http://www.sysbio.de/
-https://biobricks.org/bpa/find-a-part/
+Handbook of Systems Biology: http://www.sciencedirect.com/science/book/9780123859440
-https://registry.synberc.org/
+Reflexive Systems Biology: http://portal.cbu.uib.no/rsb
-==DYI Bio/Citizen science==
+===Bioinformatics & Annotation===
-http://blogs.plos.org/citizensci/2013/07/15/that-moment-when-you-realize-how-little-you-actually-know/
+Neural Network Promoter Prediction: http://www.fruitfly.org/seq_tools/promoter.html
-http://www.cellslider.net/
+Artemis genome browser: http://www.sanger.ac.uk/resources/software/artemis/
-http://madlab.org.uk/
+BASYS Bacterial Annotation software: http://basys.ca/
-http://www.diygenomics.org/
+SoftBerry: http://linux1.softberry.com/berry.phtml
-http://hivebio.org/
+Promethease: http://snpedia.com/index.php/Promethease
-http://www.brightworkcoresearch.com/
+GLIMMER microbial gene-finding system: http://www.cbcb.umd.edu/software/glimmer/
-http://portlabpdx.org/wiki/index.php?title=Main_Page
+Promoter & termination site search tools: http://molbiol-tools.ca/Promoters.htm
-http://www.pietervanboheemen.nl/
+Phyre 2 - protein fold recognition: http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index
-http://citizensciencequarterly.com/
+FITBAR DNA binding protein binding site predictor: http://archaea.u-psud.fr/fitbar/
-http://www.citizensciencecenter.com/?gclid=CJLtwKXoprcCFczC3god6U4Ahw
+Simple Consensus Maker: http://www.hiv.lanl.gov/content/sequence/CONSENSUS/SimpCon.html
-http://bamh1.com/
+Model SEED - blog: http://blog.theseed.org/model_seed/
-http://diyhpl.us/wiki/diybio/faq/
+Model SEED - Viewer: http://seed-viewer.theseed.org/seedviewer.cgi?page=ModelView
-http://www.lapaillasse.org
+http://www.bioinformatics.org/
-http://openbioprojects.net/
+Plasmid map drawer: http://www.rf-cloning.org/savvy.php
-http://hackteria.org/
+EMBOSS ((European Molecular Biology Open Software Suite): http://bips.u-strasbg.fr/EMBOSS/
-http://blogs.plos.org/citizensci/
+BioBrick -> GenBank converter: http://2010.igem.org/Team:Cambridge/Tools/GenBank
-http://diybioftw.com/
-http://dyibio.org
+HMMER: http://hmmer.janelia.org/
-DYI Bio Europe: http://www.diybio.eu/
+Jcat Codon Adaption Tool: http://www.jcat.de/
-http://genefoo.com/
+===Cloning & Construction===
-Open PCR: http://openpcr.org/
+The Constructor: http://2011.igem.org/Team:Wageningen_UR/Softwaretool/
-www.indiebiotech.com
+NEBcutter: http://tools.neb.com/NEBcutter2/
-Ask a Biosafety expert: http://ask.diybio.org/
+J5 automated DNA assembly: http://j5.jbei.org/index.php/Main_Page
-Public Laboratory: http://publiclaboratory.org/home
+Genome Compiler: http://www.genomecompiler.com/
-BOSSLAB: http://bosslab.org/
+Gibthon: http://django.gibthon.org/
-http://biocurious.org/
-http://genspace.org/
+Transcription and Translation: http://www.attotron.com/cybertory/analysis/trans.htm
-Science hideout: http://www.youtube.com/user/ScienceHideout
+All-IN-ONE SEQ-ANALYZER: http://www-personal.umich.edu/~ino/blast.html
-http://basementbiotech.org/
-http://www.biotinker.com/
+GENtle 2: http://ec2-23-20-169-157.compute-1.amazonaws.com/dev/#
-BiologiGaragen: http://biologigaragen.org/
+'''DNA oligomer design tools:'''
-http://haberlandt.blablablab.org/
+Primer-BLAST: http://www.ncbi.nlm.nih.gov/tools/primer-blast/
-http://www.bugssonline.org/
+QuickChange primer design script: http://sosnick.uchicago.edu/stuff/quickchanger.pl
-Suggested Standard Operating Procedures for DYI Bio work: https://github.com/cathalgarvey/DIYbio-IE-SOPs
+IDT SciTools - oligo design and analysis: http://eu.idtdna.com/scitools/scitools.aspx
-http://roningenetics.org/
+PrimerDigital: http://primerdigital.com/tools/
-https://www.biotinkering.org/
+Primer3: http://primer3.wi.mit.edu/
+Primer3 plus: http://www.bioinformatics.nl/cgi-bin/primer3plus/primer3plus.cgi
-'''Bibliography:'''
+InvitroGen OligoPerfect designer: http://tools.invitrogen.com/content.cfm?pageid=9716
-Process, Not Product: Investigating Recommendations for Improving Citizen Science “Success” : http://www.plosone.org/article/info:doi/10.1371/journal.pone.0064079
+PrimerQuest: www.idtdna.com/Scitools/Applications/Primerquest/
+JCVI Primer designer: http://primerdesigner.sourceforge.net/
-===Crowdfunding===
+Primer Design Assistant: http://dbb.nhri.org.tw/primer/index.html
-http://www.petridish.org/
+PrimerZ: http://genepipe.ngc.sinica.edu.tw/primerz/beginDesign.do
-https://www.gittip.com/about/
+Primo PCR Primer Design: http://www.changbioscience.com/primo/primo.html
-http://scifundchallenge.org/
+Eurofins PCR primer design: https://ecom.mwgdna.com/services/webgist/pcr_primer_design_new.tcl?ot=OLIGO_PCRD&item_id=new
-http://www.kickstarter.com/
+Eurofins Sequencing primer design: https://ecom.mwgdna.com/services/manage-primers/design-primer.tcl
-https://www.microryza.com/
+'''DNA/oligomer property calculators:'''
-http://www.indiegogo.com/
+http://www.basic.northwestern.edu/biotools/oligocalc.html
-http://www.gofundme.com/
+'''In silico PCR tools:'''
-http://www.rockethub.com/
+http://exon.ucsc.edu/cgi-bin/hgPcr
-http://www.scistarter.com/
+http://insilico.ehu.es/PCR/
-Projects:
+http://www.bioinformatics.org/sms2/pcr_products.html
-http://www.kickstarter.com/projects/antonyevans/glowing-plants-natural-lighting-with-no-electricit
+http://qsnp.gen.kyushu-u.ac.jp/genome/InSilicoPCR.html
-http://www.indiegogo.com/projects/ubiome-sequencing-your-microbiome
+http://mfold.rna.albany.edu/?q=DINAMelt/Quickfold
-===Crowdsourced science===
+http://www.molbiol-tools.ca/Repeats_secondary_structure_Tm.htm
-http://www.cellslider.net/
+===Protocols===
+http://www.protocolpedia.com/
-===Contract research services===
+OpenWetWare protocols - main page: http://openwetware.org/wiki/Protocols
-https://www.scienceexchange.com/
+Springer Protocols: http://www.springerprotocols.com
-===Home experiments/projects===
+Complementary annealing of oligonucleotides: http://www.sigmaaldrich.com/life-science/custom-oligos/custom-dna/learning-center/annealing-oligos.html
-(Legality may vary depending on your location)
+Knight lab - annealing protocol: http://openwetware.org/wiki/Knight:Annealing_and_primer_extension_with_Taq_polymerase
-How to do a pGlo transformation: http://www.youtube.com/watch?v=sovDqqhQJx8
+Knight lab -restriction digest protocol: http://openwetware.org/wiki/Knight:Restriction_Digest
-http://www.instructables.com/id/The-Light-Fountain-a-Bioluminescent-Hourglass/
+Endy: Colony PCR: http://openwetware.org/wiki/Endy:Colony_PCR
+Addgene Moleular cloning guide: http://www.addgene.org/plasmid_reference/index/#cloning
-http://cibt.bio.cornell.edu/workshops_and_summer_programs/0608alum/lumos.pdf
+Addgene restriction digest protocol: http://www.addgene.org/plasmid_protocols/restriction_digest/
-http://www.instructables.com/id/DNAquiri-the-delicious-DNA-extraction/%3Eprotocol
+http://www.addgene.org/plasmid_protocols/bacterial_plates/
-==Art and Strategy==
+http://www.methods.info/Methods/RNA_DNA/restr_analysis.html
-http://biocouture.co.uk/about/
+http://www.methodbook.net/dna/restrdig.html
-Xenotext: http://www.law.ed.ac.uk/ahrc/script-ed/vol5-2/editorial.asp
+Current Protocols: http://www.currentprotocols.com
-http://en.wikipedia.org/wiki/Christian_B%C3%B6k#The_Xenotext_experiment
+Science Advisory Board - protocols: http://www.scienceboard.net/resources/protocols.asp?criteria=
-http://www.instructables.com/id/Twitter-Mood-Light-The-Worlds-Mood-in-a-Box/
+Protocol online: http://protocol-online.org/
-http://blog.arduino.cc/2013/05/19/the-mood-lamp-recognizes-your-facial-expressions-and-turns-them-into-light/?utm_source=buffer&utm_medium=facebook&utm_campaign=Buffer&utm_content=buffer7d04e
+http://site.methodological.co/
-==Personal genomics==
+http://bio-protocol.org/
-https://www.23andme.com/
+====Misc. ====
-http://www.23andyou.com
+http://www.nature.com/scitable
-http://www.genomesunzipped.org/
+https://www.assaydepot.com/
-uBiome - sequencing your microbiome: http://www.indiegogo.com/projects/ubiome-sequencing-your-microbiome
+https://www.scienceexchange.com/
-http://www.personalgenomes.org/
+http://matt.might.net
-==Companies==
+http://www.reportergene.com/2011/10/eln-electronic-lab-notebooks.html
-Evolutionary Solutions: http://www.evosol.co/
+http://www.phdontrack.net/
-http://www.allelebiotech.com/allele3/index.php
+Misc. molecular biology freeware: http://molbiol-tools.ca/molecular_biology_freeware.htm
-Era7: http://era7bioinformatics.com/en/index.cfm
+J Craig Venter Institute - software: http://www.jcvi.org/cms/research/software/
-DNA electronics: http://dnae.co.uk/
+DNA sequence transformation tools: http://molbiol-tools.ca/Convert.htm
-Genome Compiler: http://www.genomecompiler.com/
+The Oligator: http://gcat.davidson.edu/igem10/tutorial.html
-http://www.strandls.com
+http://www.zappylab.com/apps
-http://www.novozymes.com/en/Pages/default.aspx
+Nucleic Acid sequence massager: http://www.attotron.com/cybertory/analysis/seqMassager.htm
-http://www.genabler.com
+String functional protein interaction networks: http://string-db.org/newstring_cgi/show_input_page.pl?UserId=y_1_rGDH3F2_&sessionId=JqYi1VB4HXQn
-http://www.syntheticgenomics.com/
+ProtLifePred protein lifetime calculator: http://protein-n-end-rule.leadhoster.com/
-BGI: http://www.genomics.cn/en/index
+See also: http://2012.igem.org/User_talk:Jarlemag and http://2012.igem.org/Team:NTNU_Trondheim/Links
-Gen9: http://gen9bio.com/
+US National Human Genome Research Institute: http://www.genome.gov/
-DNA 2.0: https://www.dna20.com
+Codon table: http://en.wikipedia.org/wiki/DNA_codon_table
-Integrated DNA Technologies (IDT): http://eu.idtdna.com/site
+LaTeX lab book: http://openwetware.org/wiki/LabbookInLatex
-GenScript: http://www.genscript.com/
+Los Alamos Technical Reports collection: http://www.sciencemadness.org/lanldocs.html
-Desktop Genetics: http://www.deskgen.com
+http://thelabrat.com
-Ginkgo Bioworks: http://ginkgobioworks.com/
+The reproducibility project: http://openscienceframework.org/project/EZcUj/wiki/home
-Biofab: http://www.biofab.org/
+NCBI Coffee Break: http://www.ncbi.nlm.nih.gov/books/NBK2345/
-http://www.knome.com/
+http://www.lablit.com/
-http://www.nucleics.com/
-https://www.transcriptic.com/
+Addgene - Genome engineering Guide: https://www.addgene.org/Genome_Engineering/?utm_source=Addgene+March+14%2C+2013+Newsletter+Final&utm_campaign=March+2013+Newsletter&utm_medium=email
-Cambrian Genomics:
+https://genomeinterpretation.org
-https://angel.co/cambrian-genomics
-http://cambriangenomics.com/
-http://www.genologics.com
+===Science News & Discussion ===
-==Suppliers==
+===Magazines/Blogs/Newssites===
-http://store.p212121.com/
+http://www.labcritics.com/
-http://www.biosciencetools.com/
+http://scienceblok.com/
-http://www.laboratory-journal.com/
+http://sciblogs.co.nz/
-www.labx.com
+http://www.scicentral.com/index.html
-http://www.oxfordgenetics.co.uk/
+http://blogs.discovermagazine.com/seriouslyscience/
-BioBasic: http://store.biobasic.com/
+http://epigenie.com/
-Promega: http://no.promega.com/
+http://www.livescience.com/
-Qiagen: http://www.qiagen.com/
+http://scienceblogs.com/
-DongSheng Biotech: http://dongshengbio.com/en/index.asp
+http://scientopia.org/blogs/
-Macrogen Inc.: http://www.macrogen.com/eng/index/
+The SynBioLogist: http://paper.li/Socrates_Logos/1306934563#
-Carolina Biological: http://www.carolina.com/
+SciTech Daily: http://scitechdaily.com/
-Epoch Life Sciences: http://www.epochlifescience.com/Default.aspx
+The Scientist: http://www.the-scientist.com/
-http://www.hometrainingtools.com/
+GEN Magazine: http://www.genengnews.com/
-http://www.labsupplymall.com/
+Synthetic biology - Biohacking: http://paper.li/Karelman/1353849467
-United Nuclear: http://www.unitednuclear.com/
+http://www.reportergene.com/
-New England Biolabs: www.neb.com
+Super awesome Sylvia: http://sylviashow.com/
-Elemental Scientific: http://www.elementalscientific.net/store/Scripts/default.asp
+http://www.technologyreview.com/
-Jena BioScience: http://www.jenabioscience.com/
+http://www.scilogs.com/
-http://www.synthesisgene.com/
+'''Blogs:'''
-Thermo scientific: http://www.thermoscientific.com/ecomm/servlet/home?storeId=11152
+http://ironchefsynbio.wordpress.com/
-http://www.millipore.com/index.do
+http://retractionwatch.wordpress.com/
-See also http://www.made-in-china.com/
+http://www.genomesunzipped.org/
-Open Biotechnology: http://www.openbiotech.com/
+http://ing.dk/blogs/folkeforsker
-http://www.metabion.com/home/index.php
+http://phylogenomics.blogspot.no/
-http://bostonbioproducts.com/
+http://88proof.com/synthetic_biology/blog/
-http://www.sbsbio.com/english/dnahc.html
+http://bytesizebio.net
-http://www.interfarm.no/produkter/
+The hardest science - a psychology blog: http://hardsci.wordpress.com/
-http://www.iorodeo.com/
+http://dienekes.blogspot.no/
-'''Used equipment vendors:'''
+Michael Eisen - It's Not Junk: http://www.michaeleisen.org/blog/
-http://www.labrecyclers.com/index.html
+Open Helix: http://blog.openhelix.eu/
-==Useful links==
+http://ivory.idyll.org/
-*[[OpenWetWare:Welcome|Introductory tutorial]]
-*[[Help|OpenWetWare help pages]]
+http://titojankowski.com/
-===Conferences and meetings===
+See also http://www.microbe.net/microbiology-blogs/
+'''Aggregators:'''
+http://paper.li/SAGRudd/1323661247
-See [[User:Jarle Pahr/Conferences|Conferences]]
+http://paper.li/leclercfl/bioscience
-===Scientific challenges and competitions===
+The Daily Plasmid: http://paper.li/DesktopGenetics/1360025246
+Norwegian:
-CAGI - Critical Assesment of Genome Information: https://genomeinterpretation.org/
+http://thaliana.blogg.no/1290598240_molekylrbiologi.html
-Assemblathon
+Social & personalized media:
-Variathon: http://bioinf.dimi.uniud.it/variathon
+http://storify.com/GenomeMedicine/gene-patenting-a-genome-medicine-twitter-chat
-Alignathon
+http://trap.it/
-Sequence squeeze: http://www.sequencesqueeze.org/
-===Resources for researchers===
+'''Discussion sites:'''
-http://www.protocol-online.org/science-forums-2/Dissertation-and-Paper-Writing/
+http://pubpeer.com/
-http://www.protocol-online.org/science-forums-2/Career-Advice/
+===In the news/Commentaries===
-https://www.researchgate.net
+George Church - Reading and writing omes: http://www.nature.com/msb/journal/v9/n1/full/msb201275.html
-http://friendfeed.com/the-life-scientists
+Synthetic Biology comes down to Earth: http://chronicle.com/article/Synthetic-Biology-Comes-Down/137587/
-http://nigerianbioscientist.com/
+Predictability - the brass ring for synthetic biology: http://newscenter.lbl.gov/science-shorts/2013/03/13/predictability-the-brass-ring-for-synthetic-biology/
-===Educational resources===
+Press Release - Bootstrapping Biotechnology: Engineers Cooperate to Realize Precision Grammar for Programming Cells http://www.synberc.org/bootstrapping-biotechnology
-http://www.bioinformatics.nl/molbi/SimpleCloningLab/index.htm
-ROSALIND Bioinformatics challenges: http://rosalind.info/problems/locations/
+HeLa genome sequenced: http://www.embl-hamburg.de/aboutus/communication_outreach/media_relations/2013/130311_Heidelberg/index.html
-Project Euler: http://projecteuler.net/
+Tools for the synthetic biology revolution: http://www.research.gov/research-portal/appmanager/base/desktop;jsessionid=3TGCRFyZ9XnN15qs8j88ln1pDTfthtMjVl182LxzvNVG84tp0M1g!-943464721!1767787818?_nfpb=true&_windowLabel=awardSummary_1&_urlType=action&awardSummary_1_action=selectAwardDetail&awardSummary_1_id=%2FresearchGov%2FAwardHighlight%2FPublicAffairs%2F23670_ToolsfortheSyntheticBiologyRevolution.html
-AddGene molecular biology reference: http://www.addgene.org/mol_bio_reference/
-https://www.manylabs.org/
+Badomics: http://www.gigasciencejournal.com/content/1/1/6
-http://www.dnalabbook.co.uk/
+http://keithbradnam.com/blog/2013/6/23/introducing-jabba-just-another-bogus-bioinformatics-acronym.html
-=Wiki sites=
+===Jobs===
-http://www.scholarpedia.org
+https://www.odesk.com/
-SNPedia.com
+http://www.tu.no/jobb/
-http://www.wikigenes.org
+http://www.aftenposten.no/jobb/
-http://ecoliwiki.net
+http://www.ingeniorstillinger.no/
-===Discussion and communities===
+http://no.indeed.com/jobs?q=Ingeni%C3%B8r&gclid=CJL3_IiL47YCFQdd3godpBMArQ
-http://molecularbiology.forums.biotechniques.com/
+http://www.nature.com/naturejobs/science/jobs
-DYI Bio Google Group: https://groups.google.com/forum/?fromgroups#!forum/diybio
+http://www.teknologijobb.no/jobads/Legg%20til%20i%20filter/Bransje/152
-http://www.americanbiotechnologist.com/blog/
+http://yes.jucan.no/
-BioStar - questions and answers on bioinformatics and genomics: http://www.biostars.org/
+https://uio.easycruit.com/
-Biology.stackexchange.com: http://biology.stackexchange.com/
-http://www.biology-online.org/
+Tips:
-https://www.researchgate.net/
+Search professional/business search sites for companies in fields of interest.
+Company webpages may not be updated to show vacant positions. To avoid missing vacancies, save pages on job portals showing vacancies on a company basis.
-https://www.researchgate.net/topics/?nav=discussions
+===Games===
-http://www.protocol-online.org/biology-forums/
+BioHack: http://marketplace.xbox.com/en-US/Product/BioHack/66acd000-77fe-1000-9115-d802585505ee
-Nature Protocols discussion forum: http://network.nature.com/groups/natureprotocols/forum/topics
+http://eterna.cmu.edu/web/
-http://www.reddit.com/r/labrats/
+http://adamilab.msu.edu/evolve-and-conquer/
-http://scienceboard.net/forum/default.asp
+http://fold.it/portal/
-http://branch.com/g/level-headed-biotech
+http://phylo.cs.mcgill.ca/ (publication: http://www.plosone.org/article/info:doi/10.1371/journal.pone.0031362)
-http://www.bio.net/
+http://io9.com/these-cool-games-let-you-do-real-life-science-486173006
-===Apps===
+http://www.citizensort.org/
-mPartsregistry: http://mpartsregistry.appspot.com
-===Persons/Research groups===
-http://genefish.wikispaces.com/
-Mark Pallen: http://www2.warwick.ac.uk/fac/med/research/microinfect/staff/pallengroup/
-Chris Anderson lab: https://andersonlab.qb3.berkeley.edu/
-Magni Paolo: http://www.labmedinfo.org/people/magni
-http://www.rpgroup.caltech.edu/publications/
-Heng Li. "Alignment God".
-Dworkin lab: https://www.msu.edu/~idworkin/publications.html
-Titus Brown:
-Erlich lab: http://erlichlab.wi.mit.edu/index.html
-Cristopher mason: http://www.masonlab.net/
-http://openwetware.org/wiki/User:Vincent
-Markus Gershater
-http://www.princeton.edu/~ajlgroup/
-Heng Li
-Michael Cashel: https://science.nichd.nih.gov/confluence/display/pgd/Michael+Cashel+Lab
-Jim Collins: http://www.bu.edu/abl/
-Jason Kelly: http://openwetware.org/wiki/Jason_Kelly
-Tom Ellis: http://openwetware.org/wiki/User:Ellis
-George Church: http://arep.med.harvard.edu/gmc/
-Jay Keasling: http://keaslinglab.lbl.gov/research_areas/index.html
-Chris Voigt
-Bernahrd Ø Pallsson: http://gcrg.ucsd.edu/Researchers/Palsson
-Tom Knight
-Joe Felsenstein: http://www.gs.washington.edu/faculty/felsenstein.htm
-*Professor of Genome Sciences and Biology, University of Washington.
-Drew Endy: http://openwetware.org/wiki/User:Endy
-Densmore lab: http://people.bu.edu/dougd/research.html
-Ron Weiss: http://groups.csail.mit.edu/synbio/people/professor-ron-weiss/
-Jean Peccoud
-Jonathan Eisen
-Martin Fusenegger
-Pamela Silver
-Rob Carlson
-Ethan Perlstein: http://www.perlsteinlab.com/
-Anthony Evans
-Nick Loman:
-http://pathogenomics.bham.ac.uk/clinicogenomics/
-http://pathogenomics.bham.ac.uk/blog/author/nick/
-Titus Brown: http://ivory.idyll.org/blog/category/science.html
-Lex Nedebragt:
-http://contig.wordpress.com/
-https://twitter.com/lexnederbragt
-Manual Corpas:
-Barry L Wanner: https://www.bio.purdue.edu/molecular_biosciences/directory.php?refID=30
-*Made many E. coli strains.
-Andrew Hessel: http://andrewhessel.com/
-===Societies and associations===
-Society for applied microbiology: http://www.sfam.org.uk/
-American Association for Clinical Chemistry : http://www.aacc.org/Pages/default.aspx
-Royal Society of Chemistry: http://www.rsc.org/
-Society for general microbiology: http://www.sgm.ac.uk/
-American society for microbiology: http://www.asm.org/
-Norsk Kjemisk selskap: http://www.kjemi.no/
-International Society for Systems Biology: http://www.issb.org/
-Genetics Society of America: http://www.genetics-gsa.org/
-British Society for Gene and Cell Therapy: https://www.facebook.com/BSGCT
-American Society of Human Genetics (ASHG):
-Society for Molecular Biology and Evolution (SMBE): http://www.smbe.org/
-===Publications===
-{| class="wikitable" border="1" cellpadding="5" cellspacing="0"
-|-
-! Journal name!! Publisher !! Open access status !! Link
-|-
-| ACS Synthetic Biology || American Chemical Society ||No ||  http://pubs.acs.org/journal/asbcd6
-|-
-| Bioengineered (Previously: Bioengineered bugs) || Landes Bioscience ||Partial ||http://dev.landesbioscience.com/journals/bioe/
-|-
-|Bioinformatics||Oxford Journals|| ||http://bioinformatics.oxfordjournals.org/
-|-
-|Biology Open||Company of Biologists||Yes||http://bio.biologists.org/
-|-
-|BMC Medical Genomics||BMC||Yes||http://www.biomedcentral.com/bmcmedgenomics/
-|-
-|BMC Proceedings||BMC||Yes||http://www.biomedcentral.com/bmcproc
-|-
-| PLOS One  ||Public Library of Science || Yes ||http://www.plosone.org/
-|-
-| Nucleic Acids Research|| Oxford Journals || Yes || http://nar.oxfordjournals.org/
-|-
-|BMC Systems Biology||BioMedCentral||Yes||http://www.biomedcentral.com/bmcsystbiol/
-|-
-|BMC Microbiology||BioMedCentral||Yes||http://www.biomedcentral.com/bmcmicrobiol
-|-
-|Cell||Cell Press|| ||http://www.cell.com/
-|-
-|Cell Reports||Cell Press ||Yes||http://cellreports.cell.com/
-|-
-|The EMBO Journal||Nature Publishing Group ||No||http://www.nature.com/emboj/index.html
-|-
-|Frontiers in Synthetic Biology||Nature Publishing Group|| ||http://www.frontiersin.org/Synthetic_Biology/about
-|-
-|Genetics||Genetics Society of America|| ||http://www.genetics.org/
-|-
-|G3: Genes, Genomes, Genetics Mission ||Genetics Society of America|| ||http://www.g3journal.org/
-|-
-|Genome Research||Cold Spring Harbor Press||Partial (6 month embargo)|| http://genome.cshlp.org/
-|-
-|Genome Biology||BMC||Yes||http://genomebiology.com/
-|-
-|Genome Medicine||BioMedCentral||Yes||http://genomemedicine.com/
-|-
-|Journal of Experimental Biology||Company of Biologists||http://jeb.biologists.org/
-|-
-|Journal of molecular biology||Elsevier ||Partial||http://www.journals.elsevier.com/journal-of-molecular-biology/
-|-
-|Journal of biological chemistry||American Society for Biochemistry and Molecular Biology.  ||No||http://www.jbc.org/
-|-
-|Journal of bacteriology||American Society for Microbiology ||No||http://jb.asm.org/
-|-
-|Journal of Bioscience and Engineering||  || ||http://www.journals.elsevier.com/journal-of-bioscience-and-bioengineering/
-|-
-|Journal of clinical microbiology||American Society for Microbiology||No||http://jcm.asm.org/
-|-
-|mBio||ASM||Yes||http://mbio.asm.org/
-|-
-|Methods||Elsevier||No||http://www.journals.elsevier.com/methods
-|-
-|Microbiology||SGM/HighWire Press||No||http://mic.sgmjournals.org/
-|-
-|Microbiology and Molecular Biology Reviews (MMBR). Formerly Bacteriology Reviews||ASM|| ||mmbr.asm.org
-|-
-|Metabolic Engineering||Elsevier||Partial||http://www.journals.elsevier.com/metabolic-engineering/
-|-
-|Molecular Systems Biology||EMBO/Nature Publishing Group||Yes||http://www.nature.com/msb/index.html||
-|-
-|PLOS Computational Biology||Public Library of Science||Yes||http://www.ploscompbiol.org/
-|-
-|PLOS Pathogens||PLOS||Yes||http://www.plospathogens.org/
-|-
-|Proceedings of the National Academy of Sciences||National Academy of Sciences||No||http://www.pnas.org/
-|-
-|Protein expression and purification||Elsevier||No||http://www.sciencedirect.com/science/journal/10465928
-|-
-|Genome Announcements||ASM||Yes||http://genomea.asm.org/
-|-
-|Futures||Elsevier||?||http://www.sciencedirect.com/science/journal/00163287
-|-
-|Microbial Cell Factories||BioMedCentral||Yes||http://www.microbialcellfactories.com/
-|-
-|Engineering Studies||Taylor & Francis|| ?||http://www.tandfonline.com/loi/test20
-|-
-|FEMS Microbiology Reviews|| || ||http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291574-6976
-|-
-|Nature Biotechnology||Nature Publishing Group||No||http://www.nature.com/nbt/index.html
-|-
-|Nature Genetics||Nature Publishing group||No||http://www.nature.com/ng/index.html
-|-
-|Plasmid||Elsevier||No||http://www.journals.elsevier.com/plasmid/
-|-
-|Journal of Computational Biology||Liebert Publishing||No||http://www.liebertpub.com/CMB
-|-
-|Trends in Biochemical Sciences||Elsevier|| ||http://www.sciencedirect.com/science/journal/09680004
-|-
-|Trends in Microbiology||Elsevier/Cell Press|| ||http://www.sciencedirect.com/science/journal/0966842X
-|-
-|Molecular Genetics & Genomic Medicine||Wiley||Yes||http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%292324-9269
-|-
-|Molecular genetics and genomics||Springer Verlag|| ||http://link.springer.com/journal/438
-|-
-|Biochemistry and Molecular Biology Education||Wiley||No||http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291539-3429
-|-
-|Current opinion in chemical biology||Elsevier|| ||http://www.sciencedirect.com/science/journal/13675931
-|-
-|New England Journal of Medicine||NEJM Group|| ||http://www.nejm.org/
-|-
-|Systems and Synthetic Biology||Springer|| ||http://link.springer.com/journal/11693
-|-
-|Scientific Reports||Nature Publishing Group||Yes||http://www.nature.com/srep/index.html
-|}
-Cold Spring Harbor Perspectives: http://cshperspectives.cshlp.org/
-Computational and Structural Biotechnology Journal
-http://www.journalnetwork.org/journals/science-general/citizen-science/citizen-science-innovation.html
-Biotechniques: http://www.biotechniques.com/
-https://www.openlibhums.org/
-Current protocols in molecular biology: http://onlinelibrary.wiley.com/book/10.1002/0471142727
-http://www.g3journal.org/
-http://push.cwcon.org/
-eLife: http://elife.elifesciences.org/
-https://peerj.com/
-Faculty of 1000: http://f1000.com/
-Social Science Research Network: http://www.ssrn.com/
-Open access:
-http://en.wikipedia.org/wiki/List_of_open-access_journals
-http://scholarlyoa.com/
-http://www.doaj.org/
-http://www.opendoar.org/
-http://blogs.scientificamerican.com/guest-blog/2013/04/03/who-killed-the-preprint-and-could-it-make-a-return/
-Publication tools:
-https://collage.elsevier.com/
-Reference management / Social bookmarking:
-http://www.mendeley.com/
-http://www.citeulike.org/
-JabRef reference manager: http://jabref.sourceforge.net/
-===Publishers===
-Springer
-Elsevier
-CRC Press
-Horizon Press
-===Databases/Repositories===
-PlasmID database: http://plasmid.med.harvard.edu/PLASMID/
-Addgene plasmid repository: http://www.addgene.org/
-DNASU plasid repository: http://dnasu.asu.edu/DNASU/
-The Open Construct Database: http://www.the-odin.com
-Bionumbers - [http://bionumbers.hms.harvard.edu/default.aspx The database of useful biological numbers]
-EcoCyc - E. coli K-12 MG1655 database: http://www.ecocyc.org/
-EcoGene: http://www.ecogene.org
-JWS Online model database: http://jjj.biochem.sun.ac.za/database/
-http://systems-biology.org/resources/model-repositories/
-Genome-Scale metabolic network database: http://synbio.tju.edu.cn/GSMNDB/gsmndb.htm
-Array express: http://www.ebi.ac.uk/arrayexpress/
-Rebase restriction enzyme database: http://rebase.neb.com/rebase/rebase.html
-genomes project: http://browser.1000genomes.org/index.html
-BRENDA Enzymes: http://www.brenda-enzymes.info/
-KEGG
-GenBank
-http://datadryad.org/
-http://www.cathdb.info/
-===Codon usage===
-http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=83333
-Codon usage analyzer: http://www.bioinformatics.org/sms2/codon_usage.html
-===Other informational resources===
-National Centre for Biotechnology Education: http://www.ncbe.reading.ac.uk/menu.html
-http://seqanswers.com
-NCBI vs EMBL vs DDBJ.: http://lib.bioinfo.pl/courses/view/151
-The DDBJ/EMBL/GenBank Feature Table Definition: http://www.insdc.org/files/feature_table.html#1
-http://openwetware.org/wiki/DNA - Contains many protocols
-Bite Size Bio: http://bitesizebio.com/
-BenchFly: http://www.benchfly.com/
-http://biologicalworld.com/protocols.htm
-http://www.methods.info/
-http://www.biotechdaily.com/
-http://www.zenbiology.com/
-http://www.my-whiteboard.com/
-http://lablife.org
-http://www.molbiol-tools.ca/
-http://www.molecularinfo.com/MTM/MTM.html
-http://www.openhelix.com/ - Genomics and bioinformatics resources.
-===Programming===
-BioPython: http://biopython.org/wiki/Main_Page
-CodEval -  programming challenges: http://codeeval.com/
-===Law and ethics===
-http://www.genomicslawreport.com/
-American journal of Bioethics: http://www.tandfonline.com/toc/uajb20/current
-IASB Code of Conduct for best practices in gene synthesis: http://www.ia-sb.eu/go/synthetic-biology/synthetic-biology/code-of-conduct-for-best-practices-in-gene-synthesis/
-IASB - About Biosafety & Security: http://www.ia-sb.eu/go/synthetic-biology/synthetic-biology/biosafety-biosecurity/
-Andrew W Torrance on DNA copyright: http://papers.ssrn.com/sol3/papers.cfm?abstract_id=2017670
-===Cloning===
-SLIC, Gibson, CPEC and SLiCE assembly methods: http://j5.jbei.org/j5manual/pages/22.html
-RF cloning: http://www.rf-cloning.org/QandA.php
-PCR Primer design: http://bioweb.uwlax.edu/genweb/molecular/seq_anal/primer_design/primer_design.htm
-PCR: http://www.molbiol-tools.ca/PCR.htm
-OpenWetWare - designing primers: http://openwetware.org/wiki/Designing_primers
-PCR Guide: http://medicine.yale.edu/labs/henegariu/www/tavi/Guide.html
-PCR troubleshooting: http://medicine.yale.edu/labs/henegariu/www/tavi/Trblesht.html
-DNA Tm estimation methods: http://openwetware.org/wiki/Primer_Tm_estimation_methods
-DNA stability: http://openwetware.org/wiki/DNA_stability
-E. coli cloning checklist: http://openwetware.org/wiki/Cloning_Checklist
-Guide to Gibson assembly: http://www.synbio.org.uk/dna-assembly/guidetogibsonassembly.html
-Primer design guidelines: http://www.premierbiosoft.com/tech_notes/PCR_Primer_Design.html
-===Sequencing===
-Design of sequencing primers: http://seqcore.brcf.med.umich.edu/doc/dnaseq/primers.html
-Conserved primer sequences for PCR amplification and sequencing from nuclear ribosomal RNA in fungi: http://biology.duke.edu/fungi/mycolab/primers.htm
-GenScript DNA Sequencing Primers Design Tool: http://www.genscript.com/cgi-bin/tools/sequencing_primer_design
-===Software tools===
-Molecular Biology Freeware for Windows: http://molbiol-tools.ca/molecular_biology_freeware.htm#Graphic%20packages
-Molecular Biology & Bioinformatics Resources: http://library.weill.cornell.edu/eresources/molbio.html
-Bioinformatics Tools and Resources for Biomedical Scientists and Students - http://www.changbioscience.com/virtualab.html
-DNA copy number calculator: http://www.uri.edu/research/gsc/resources/cndna.html
-Graphics software:
-===Systems Biology===
-http://systems-biology.org/
-Cytoscape: www.cytoscape.org
-CAIN stochastic simulations for chemical kinetics: http://cain.sourceforge.net/
-COBRA Constraints-based modelling toolbox:
-CellNetAnalyzer: http://www.mpi-magdeburg.mpg.de/projects/cna/cna.html
-CellDesigner: http://celldesigner.org/
-OptFlux: http://www.optflux.org/
-Systems Biology Markup Language: www.sbml.org
-SBML to LaTex report generator: http://www.cogsys.cs.uni-tuebingen.de/software/SBML2LaTeX/index.html
-Systems Biology Toolbox 2 for MATLAB: http://www.sbtoolbox2.org/main.php
-http://www.sysbio.de/
-Handbook of Systems Biology: http://www.sciencedirect.com/science/book/9780123859440
-Reflexive Systems Biology: http://portal.cbu.uib.no/rsb
-===Bioinformatics & Annotation===
-Neural Network Promoter Prediction: http://www.fruitfly.org/seq_tools/promoter.html
-Artemis genome browser: http://www.sanger.ac.uk/resources/software/artemis/
-BASYS Bacterial Annotation software: http://basys.ca/
-SoftBerry: http://linux1.softberry.com/berry.phtml
-Promethease: http://snpedia.com/index.php/Promethease
-GLIMMER microbial gene-finding system: http://www.cbcb.umd.edu/software/glimmer/
-Promoter & termination site search tools: http://molbiol-tools.ca/Promoters.htm
-Phyre 2 - protein fold recognition: http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index
-FITBAR DNA binding protein binding site predictor: http://archaea.u-psud.fr/fitbar/
-Simple Consensus Maker: http://www.hiv.lanl.gov/content/sequence/CONSENSUS/SimpCon.html
-Model SEED - blog: http://blog.theseed.org/model_seed/
-Model SEED - Viewer: http://seed-viewer.theseed.org/seedviewer.cgi?page=ModelView
-http://www.bioinformatics.org/
-Plasmid map drawer: http://www.rf-cloning.org/savvy.php
-EMBOSS ((European Molecular Biology Open Software Suite): http://bips.u-strasbg.fr/EMBOSS/
-BioBrick -> GenBank converter: http://2010.igem.org/Team:Cambridge/Tools/GenBank
-HMMER: http://hmmer.janelia.org/
-Jcat Codon Adaption Tool: http://www.jcat.de/
-===Cloning & Construction===
-The Constructor: http://2011.igem.org/Team:Wageningen_UR/Softwaretool/
-NEBcutter: http://tools.neb.com/NEBcutter2/
-J5 automated DNA assembly: http://j5.jbei.org/index.php/Main_Page
-Genome Compiler: http://www.genomecompiler.com/
-Gibthon: http://django.gibthon.org/
-Transcription and Translation: http://www.attotron.com/cybertory/analysis/trans.htm
-All-IN-ONE SEQ-ANALYZER: http://www-personal.umich.edu/~ino/blast.html
-GENtle 2: http://ec2-23-20-169-157.compute-1.amazonaws.com/dev/#
-'''DNA oligomer design tools:'''
-Primer-BLAST: http://www.ncbi.nlm.nih.gov/tools/primer-blast/
-QuickChange primer design script: http://sosnick.uchicago.edu/stuff/quickchanger.pl
-IDT SciTools - oligo design and analysis: http://eu.idtdna.com/scitools/scitools.aspx
-PrimerDigital: http://primerdigital.com/tools/
-Primer3: http://primer3.wi.mit.edu/
-Primer3 plus: http://www.bioinformatics.nl/cgi-bin/primer3plus/primer3plus.cgi
-InvitroGen OligoPerfect designer: http://tools.invitrogen.com/content.cfm?pageid=9716
-PrimerQuest: www.idtdna.com/Scitools/Applications/Primerquest/
-JCVI Primer designer: http://primerdesigner.sourceforge.net/
-Primer Design Assistant: http://dbb.nhri.org.tw/primer/index.html
-PrimerZ: http://genepipe.ngc.sinica.edu.tw/primerz/beginDesign.do
-Primo PCR Primer Design: http://www.changbioscience.com/primo/primo.html
-Eurofins PCR primer design: https://ecom.mwgdna.com/services/webgist/pcr_primer_design_new.tcl?ot=OLIGO_PCRD&item_id=new
-Eurofins Sequencing primer design: https://ecom.mwgdna.com/services/manage-primers/design-primer.tcl
-'''DNA/oligomer property calculators:'''
-http://www.basic.northwestern.edu/biotools/oligocalc.html
-'''In silico PCR tools:'''
-http://exon.ucsc.edu/cgi-bin/hgPcr
-http://insilico.ehu.es/PCR/
-http://www.bioinformatics.org/sms2/pcr_products.html
-http://qsnp.gen.kyushu-u.ac.jp/genome/InSilicoPCR.html
-http://mfold.rna.albany.edu/?q=DINAMelt/Quickfold
-http://www.molbiol-tools.ca/Repeats_secondary_structure_Tm.htm
-===Protocols===
-http://www.protocolpedia.com/
-OpenWetWare protocols - main page: http://openwetware.org/wiki/Protocols
-Springer Protocols: http://www.springerprotocols.com
-Complementary annealing of oligonucleotides: http://www.sigmaaldrich.com/life-science/custom-oligos/custom-dna/learning-center/annealing-oligos.html
-Knight lab - annealing protocol: http://openwetware.org/wiki/Knight:Annealing_and_primer_extension_with_Taq_polymerase
-Knight lab -restriction digest protocol: http://openwetware.org/wiki/Knight:Restriction_Digest
-Endy: Colony PCR: http://openwetware.org/wiki/Endy:Colony_PCR
-Addgene Moleular cloning guide: http://www.addgene.org/plasmid_reference/index/#cloning
-Addgene restriction digest protocol: http://www.addgene.org/plasmid_protocols/restriction_digest/
-http://www.addgene.org/plasmid_protocols/bacterial_plates/
-http://www.methods.info/Methods/RNA_DNA/restr_analysis.html
-http://www.methodbook.net/dna/restrdig.html
-Current Protocols: http://www.currentprotocols.com
-Science Advisory Board - protocols: http://www.scienceboard.net/resources/protocols.asp?criteria=
-Protocol online: http://protocol-online.org/
-http://site.methodological.co/
-http://bio-protocol.org/
-====Misc. ====
-http://www.nature.com/scitable
-https://www.assaydepot.com/
-https://www.scienceexchange.com/
-http://matt.might.net
-http://www.reportergene.com/2011/10/eln-electronic-lab-notebooks.html
-http://www.phdontrack.net/
-Misc. molecular biology freeware: http://molbiol-tools.ca/molecular_biology_freeware.htm
-J Craig Venter Institute - software: http://www.jcvi.org/cms/research/software/
-DNA sequence transformation tools: http://molbiol-tools.ca/Convert.htm
-The Oligator: http://gcat.davidson.edu/igem10/tutorial.html
-http://www.zappylab.com/apps
-Nucleic Acid sequence massager: http://www.attotron.com/cybertory/analysis/seqMassager.htm
-String functional protein interaction networks: http://string-db.org/newstring_cgi/show_input_page.pl?UserId=y_1_rGDH3F2_&sessionId=JqYi1VB4HXQn
-ProtLifePred protein lifetime calculator: http://protein-n-end-rule.leadhoster.com/
-See also: http://2012.igem.org/User_talk:Jarlemag and http://2012.igem.org/Team:NTNU_Trondheim/Links
-US National Human Genome Research Institute: http://www.genome.gov/
-Codon table: http://en.wikipedia.org/wiki/DNA_codon_table
-LaTeX lab book: http://openwetware.org/wiki/LabbookInLatex
-Los Alamos Technical Reports collection: http://www.sciencemadness.org/lanldocs.html
-http://thelabrat.com
-The reproducibility project: http://openscienceframework.org/project/EZcUj/wiki/home
-NCBI Coffee Break: http://www.ncbi.nlm.nih.gov/books/NBK2345/
-http://www.lablit.com/
-Addgene - Genome engineering Guide: https://www.addgene.org/Genome_Engineering/?utm_source=Addgene+March+14%2C+2013+Newsletter+Final&utm_campaign=March+2013+Newsletter&utm_medium=email
-https://genomeinterpretation.org
-===Science News & Discussion ===
-===Magazines/Blogs/Newssites===
-http://scienceblok.com/
-http://sciblogs.co.nz/
-http://www.scicentral.com/index.html
-http://blogs.discovermagazine.com/seriouslyscience/
-http://epigenie.com/
-http://www.livescience.com/
-http://scienceblogs.com/
-http://scientopia.org/blogs/
-The SynBioLogist: http://paper.li/Socrates_Logos/1306934563#
-SciTech Daily: http://scitechdaily.com/
-The Scientist: http://www.the-scientist.com/
-GEN Magazine: http://www.genengnews.com/
-Synthetic biology - Biohacking: http://paper.li/Karelman/1353849467
-http://www.reportergene.com/
-Super awesome Sylvia: http://sylviashow.com/
-http://www.technologyreview.com/
-http://www.scilogs.com/
-'''Blogs:'''
-http://ironchefsynbio.wordpress.com/
-http://retractionwatch.wordpress.com/
-http://www.genomesunzipped.org/
-http://ing.dk/blogs/folkeforsker
-http://phylogenomics.blogspot.no/
-http://88proof.com/synthetic_biology/blog/
-http://bytesizebio.net
-The hardest science - a psychology blog: http://hardsci.wordpress.com/
-http://dienekes.blogspot.no/
-Michael Eisen - It's Not Junk: http://www.michaeleisen.org/blog/
-Open Helix: http://blog.openhelix.eu/
-http://ivory.idyll.org/
-http://titojankowski.com/
-See also http://www.microbe.net/microbiology-blogs/
-'''Aggregators:'''
-http://paper.li/SAGRudd/1323661247
-http://paper.li/leclercfl/bioscience
-The Daily Plasmid: http://paper.li/DesktopGenetics/1360025246
-Norwegian:
-http://thaliana.blogg.no/1290598240_molekylrbiologi.html
-Social & personalized media:
-http://storify.com/GenomeMedicine/gene-patenting-a-genome-medicine-twitter-chat
-http://trap.it/
-'''Discussion sites:'''
-http://pubpeer.com/
-===In the news/Commentaries===
-George Church - Reading and writing omes: http://www.nature.com/msb/journal/v9/n1/full/msb201275.html
-Synthetic Biology comes down to Earth: http://chronicle.com/article/Synthetic-Biology-Comes-Down/137587/
-Predictability - the brass ring for synthetic biology: http://newscenter.lbl.gov/science-shorts/2013/03/13/predictability-the-brass-ring-for-synthetic-biology/
-Press Release - Bootstrapping Biotechnology: Engineers Cooperate to Realize Precision Grammar for Programming Cells http://www.synberc.org/bootstrapping-biotechnology
-HeLa genome sequenced: http://www.embl-hamburg.de/aboutus/communication_outreach/media_relations/2013/130311_Heidelberg/index.html
-Tools for the synthetic biology revolution: http://www.research.gov/research-portal/appmanager/base/desktop;jsessionid=3TGCRFyZ9XnN15qs8j88ln1pDTfthtMjVl182LxzvNVG84tp0M1g!-943464721!1767787818?_nfpb=true&_windowLabel=awardSummary_1&_urlType=action&awardSummary_1_action=selectAwardDetail&awardSummary_1_id=%2FresearchGov%2FAwardHighlight%2FPublicAffairs%2F23670_ToolsfortheSyntheticBiologyRevolution.html
-Badomics: http://www.gigasciencejournal.com/content/1/1/6
-http://keithbradnam.com/blog/2013/6/23/introducing-jabba-just-another-bogus-bioinformatics-acronym.html
-===Jobs===
-https://www.odesk.com/
-http://www.tu.no/jobb/
-http://www.aftenposten.no/jobb/
-http://www.ingeniorstillinger.no/
-http://no.indeed.com/jobs?q=Ingeni%C3%B8r&gclid=CJL3_IiL47YCFQdd3godpBMArQ
-http://www.nature.com/naturejobs/science/jobs
-http://www.teknologijobb.no/jobads/Legg%20til%20i%20filter/Bransje/152
-http://yes.jucan.no/
-https://uio.easycruit.com/
-Tips:
-Search professional/business search sites for companies in fields of interest.
-Company webpages may not be updated to show vacant positions. To avoid missing vacancies, save pages on job portals showing vacancies on a company basis.
-===Games===
-BioHack: http://marketplace.xbox.com/en-US/Product/BioHack/66acd000-77fe-1000-9115-d802585505ee
-http://eterna.cmu.edu/web/
-http://adamilab.msu.edu/evolve-and-conquer/
+http://sourceforge.net/projects/brainworkshop/?source=directory
-http://fold.it/portal/
-http://phylo.cs.mcgill.ca/ (publication: http://www.plosone.org/article/info:doi/10.1371/journal.pone.0031362)
-http://io9.com/these-cool-games-let-you-do-real-life-science-486173006
-http://www.citizensort.org/
 ===Just for Fun===

User:Jarle Pahr: Difference between revisions

Revision as of 05:15, 17 August 2013

Contact Info

Education

Notes

Projects

Organisms

Interesting articles

Research centres/labs

Research programs/projects

Online learning

Language

Chinese

Synthetic Biology

Biological part collections

DIY Bio/Citizen science

Art and Strategy

Personal genomics

Companies

Suppliers

Useful links

Conferences and meetings

Scientific challenges and competitions

Resources for researchers

Educational resources

Wiki sites

Discussion and communities

Apps

Persons/Research groups

Societies and associations

Publications