Difference between revisions of "User:Ilya"

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===Lab computing===
 
===Lab computing===
 
[[User:Ilya/Win.mit.edu|WIN.MIT.EDU]]
 
[[User:Ilya/Win.mit.edu|WIN.MIT.EDU]]
 
====Data storage====
 
*Endy lab [[Endy:Backup_solutions|backup solutions]] page
 
*[http://itinfo.mit.edu/article.php?id=6628 MIT TSM Backup Service]
 
**TSM software (free to MIT community per site license)
 
**Monthly service charge: $7.50 per month per computer
 
**TSM software is available for Windows, Mac and Linux free from [http://itinfo.mit.edu/product.php?id=7&level=all MIT]
 
**Backups are stored on one of the four TSM backup servers in building W91
 
**Manual or Scheduled Backup
 
**Old versions of current files and deleted files are kept for 30 days
 
**Need a separate account for each computer to be backed up
 
 
*[http://www.extremetech.com/article2/0,1697,1943502,00.asp A Tale of Two Terabyte NAS Boxes]
 
*[http://buffalotech.com/buffalo-home.php Buffalo Technology]
 
*[http://www.buffalotech.co.uk/products/category-detail.php?categoryid=29 Buffalo TeraStation Home]
 
**Example disk configuration: 4 x 250GB IDE (750GB in RAID5)
 
**Protocols: FTP, SMB
 
**USB 2.0 port for external hard drive (backup or additional storage)
 
**[http://www.pcmag.com/article2/0,1759,1780692,00.asp Review by PC Magazine]
 
***Bottom line: Flexible and reliable storage for everyone on your network. Print sharing is a plus, as is expandable USB disk storage.
 
***Pros: Offers RAID level data protection; easy-to-configure shared and private storage for all workgroup members; print sharing is a plus.
 
***Cons: Large footprint. No logging or reporting features.
 
**[http://www.extremetech.com/article2/0,1697,1917912,00.asp Review by ExtremeTech]
 
**[http://www.terastation.org/ TeraStation wiki]
 
*[http://www.buffalotech.co.uk/products/category-detail.php?categoryid=19 Buffalo TeraStation Pro]
 
**Released in March 2006
 
**S-ATA drives
 
*[http://www.infrant.com/products/products.php Infrant ReadyNAS]
 
*[http://www.infrant.com/products/products_details.php?name=ReadyNAS%20NV ReadyNAS NV]
 
*[http://www.infrant.com/products/products_details.php?name=ReadyNAS%20NVPlus ReadyNAS NV+]
 
  
 
==Notes==
 
==Notes==

Revision as of 10:39, 18 January 2007

Graduate student in Bioinformatics at Northeastern University working in Endy Lab at MIT.

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Research

Current

Semantic Web Ontology for the Registry of Standard Biological Parts.

Previous

Mating pheromone response pathway analysis across yeast and related species

Activities

OpenWetWare

Notes

Software development

BioBricks aligner - aligns sequence reads (fragments) to Biobrick sequence

Lab computing

WIN.MIT.EDU

Notes

Synthetic Biology

Software

  • Biotool2Web: Creating Simple Web Interfaces for Bioinformatics Applications
  • Sedna is an open source XML-native database management system developed from scratch in C/C++ and Scheme
  • Aggregate Data utilizes AJAX-based "sliders" so survey takers can choose anywhere along a spectrum of opinion
  • CHM file viewers for non-Windows platforms
  • Tor: an anonymous Internet communication system
  • Wireshark: network protocol analyzer (successor to Ethereal)
  • Swivel: YouTube for data - visualize and share your data with others

Application servers

  • Whitebeam - open source; applications are written as a set of XML pages that contain embedded JavaScript

Miscellaneous

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