Difference between revisions of "IGEM:Missouri University of Science and Technology/2009/Notebook/Cyanobacteria Mediated Filtration of Coal Flue/2013/08/06"

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(Date: 08/06/13 Blythe Ferriere, Annie Goo)
(fix raw html notebook nav)
 
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|style="background-color: #EEE"|[[Image:igem-logo-150px.png|150px]]<span style="font-size:20px;"> Cyanobacteria Mediated Filtration of Coal Flue Gas</span>
 
|style="background-color: #EEE"|[[Image:igem-logo-150px.png|150px]]<span style="font-size:20px;"> Cyanobacteria Mediated Filtration of Coal Flue Gas</span>
|style="background-color: #F2F2F2" align="center"|<html><img src="/images/9/94/Report.png" border="0" /></html> [[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>[[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]]<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>}}
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|style="background-color: #F2F2F2" align="center"|[[File:Report.png|frameless|link={{#sub:{{FULLPAGENAME}}|0|-11}}]][[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|[[File:Resultset_previous.png|frameless|link={{#lnpreventry:{{FULLPAGENAME}}}}]][[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]][[File:Resultset_next.png|frameless|link={{#lnnextentry:{{FULLPAGENAME}}}}]]}}
 
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<b>Purpose:</b> Dilute primers for PCR reaction of norV gene, PCR norV gene from E. coli K-12 add iGEM prefix-suffix
 
<b>Purpose:</b> Dilute primers for PCR reaction of norV gene, PCR norV gene from E. coli K-12 add iGEM prefix-suffix
  
<b>Protocol:</b> Dilution: Forward Primer: 0.39mg, To make 1 ug/uL: add 390 uL milliQ, To make 10ng/uL: add 1 uL of 1 ug/uL solution to 100 uL milliQ, Final Solution: ~0.7 uM
+
<b>Protocol:</b> Dilution: Forward Primer: 0.39mg, To make 1 ug/uL: add 390 uL milliQ, To make 10ng/uL: add 1 uL of 1 ug/uL solution to 100 uL milliQ, Final Solution: ~??.?? uM
Reverse Primer: 0.38mg, To make 1ug/uL: add 380 uL milliQ, To make 10ng/uL: add 1 uL of 1 ug/uL solution to 100 uL milliQ, Final Solution: ~0.7 uM
+
Reverse Primer: 0.38mg, To make 1ug/uL: add 380 uL milliQ, To make 10ng/uL: add 1 uL of 1 ug/uL solution to 100 uL milliQ, Final Solution: ~??.?? uM
  
 
<b>Products:</b>  
 
<b>Products:</b>  
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<b>Next:</b> Ligtate into iGEM backbone
 
<b>Next:</b> Ligtate into iGEM backbone
  
== <b>Date: 08/06/13</b> <b> Emily Puleo, Ali</b>  ==
+
== <b>Date: 08/06/13</b> <b> Emily Puleo, Alie Abele</b>  ==
  
 +
<b><span style="font-size:16px;">Title:</span></b> Digestion of 8/3/13 GE norCB with EcoRI and PstI
 +
 +
<b>Start Time:</b> 6:17 PM
 +
 +
<b>Purpose:</b> Prep norCB for ligation with iGEM standard plasmid.
 +
 +
<b>Protocol:</b> LTM ed. 2 pg 37-39. <b>Exceptions:</b> 1. Master Mix: MilliQ - 39uL, EcoRI - 0.3uL, PstI - 0.3uL, 10x Tango buffer - 6uL, use 5uL DNA per reaction
 +
 +
<b>Products:</b>
 +
{| border="1" cellpadding="5"
 +
|-
 +
! Sample Label !! Description !! Source Label !! Quantity
 +
|-
 +
| 8/6/13 D || norCB digested with EcoRI and PstI || 8/3/13 GE norCB || 1
 +
|-
 +
| 8/6/13 Master || Master mix for digestion || N/A || 1
 +
|}
 +
 +
<b>Results:</b> N/A
 +
 +
<b>Notes:</b>
 +
 +
<b>Stop Time:</b> 9:00 PM
 +
 +
<b>Next:</b> Digestion of plasmids and ligation
 +
 +
== <b>Date: 08/06/13</b> <b> Emily Puleo, Alie Abele</b>  ==
 +
 +
<b><span style="font-size:16px;">Title:</span></b> PCR nosZ gene from P. aeruginosa to add iGEM prefix & suffix
 +
 +
<b>Start Time:</b> 7:32 PM
 +
 +
<b>Purpose:</b> To PCR amplify nosZ and add iGEM prefix and suffix
 +
 +
<b>Protocol:</b> LTM ed. 2 pg 48 <b>Exceptions:</b> 1. Final primer concentration <0.1 uM
 +
PCR run conditions: Annealing Temp: 65C, elongation time: 5min, template P. aeru 7/30/13
 +
 +
<b>Products:</b>
 +
{| border="1" cellpadding="5"
 +
|-
 +
! Sample Label !! Description !! Source Label !! Quantity
 +
|-
 +
| 8/6/13 A nosZ || nosZ gene with iGEM prefix&suffix using 7.5 uL template in 0.5 mL H2O || P. aeruginosa 7/30/13 || 2
 +
|-
 +
| 8/6/13 F primer nosZ || 0.77 uM nosZ forward primer || nosZ Forward Primer || 1
 +
|-
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| 8/6/13 R primer nosZ || 0.8 uM nosZ reverse primer || nosZ Reverse Primer || 1
 +
|}
 +
 +
<b>Results:</b> N/A
 +
 +
<b>Notes:</b> See 7/31/13 notes for calculations
 +
 +
<b>Stop Time:</b> 9:00 PM
 +
 +
<b>Next:</b> Gel electrophoresis and sequencing
 +
 +
== <b>Date: 08/06/13</b> <b> Emily Puleo, Alie Abele</b>  ==
 +
 +
<b><span style="font-size:16px;">Title:</span></b> PCR hmp gene from E. coli to add iGEM prefix & suffix
 +
 +
<b>Start Time:</b> 8:10 PM
 +
 +
<b>Purpose:</b> To PCR amplify hmp and add iGEM prefix and suffix
 +
 +
<b>Protocol:</b> LTM ed. 2 pg 48 <b>Exceptions:</b> 1. Final primer concentration <0.1 uM
 +
PCR run conditions: Annealing Temp: 65C, elongation time: 5min, template washed and re-suspended E. coli 7/30/13
 +
 +
<b>Products:</b>
 +
{| border="1" cellpadding="5"
 +
|-
 +
! Sample Label !! Description !! Source Label !! Quantity
 +
|-
 +
| 8/6/13 A hmp || hmp gene with iGEM prefix&suffix using 7.5 uL template in 0.5 mL H2O || E. coli 7/30/13 || 2
 +
|-
 +
| 8/6/13 F primer hmp || 10 ng/uL hmp forward primer || hmp Forward Primer || 1
 +
|-
 +
| 8/6/13 R primer nosZ || 10 ng/uL hmp reverse primer || hmp Reverse Primer || 1
 +
|}
 +
 +
<b>Results:</b> N/A
 +
 +
<b>Notes:</b> 0.39 mg of F primer + 390 uL of milliQ, diluted 1:100 with milliQ = 10 ng/uL F primer, repeated with 0.36 mg R primer and 360 uL milliQ. NOTE: Corrected math when entered into online notebook, recheck to confirm numbers
 +
 +
<b>Stop Time:</b> 9:00 PM
 +
 +
<b>Next:</b> Gel electrophoresis and sequencing
  
 
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Latest revision as of 22:40, 26 September 2017

Igem-logo-150px.png Cyanobacteria Mediated Filtration of Coal Flue Gas Report.pngMain project page
Resultset previous.pngPrevious entry      Next entryResultset next.png

Date: 08/06/13 Blythe Ferriere, Annie Goo

Title: People in lab: Dilute primers plus PCR

Start Time: 2:15 PM

Purpose: Dilute primers for PCR reaction of norV gene, PCR norV gene from E. coli K-12 add iGEM prefix-suffix

Protocol: Dilution: Forward Primer: 0.39mg, To make 1 ug/uL: add 390 uL milliQ, To make 10ng/uL: add 1 uL of 1 ug/uL solution to 100 uL milliQ, Final Solution: ~??.?? uM Reverse Primer: 0.38mg, To make 1ug/uL: add 380 uL milliQ, To make 10ng/uL: add 1 uL of 1 ug/uL solution to 100 uL milliQ, Final Solution: ~??.?? uM

Products:

Sample Label Description Source Label Quantity
8/6/13 norV A 1 Amplified norV gene w/ iGEM prefix & suffix using 7.5 uL of template DNA template DNA 7/31/13 3
8/6/13 norV A 4 Amplified norV gene w/ iGEM prefix & suffix using 5 uL of template DNA Template DNA 7/31/13 3

Results: N/A

Notes: Changed programs about 15 minutes in

Stop Time: 5:00 PM

Next: Ligtate into iGEM backbone

Date: 08/06/13 Emily Puleo, Alie Abele

Title: Digestion of 8/3/13 GE norCB with EcoRI and PstI

Start Time: 6:17 PM

Purpose: Prep norCB for ligation with iGEM standard plasmid.

Protocol: LTM ed. 2 pg 37-39. Exceptions: 1. Master Mix: MilliQ - 39uL, EcoRI - 0.3uL, PstI - 0.3uL, 10x Tango buffer - 6uL, use 5uL DNA per reaction

Products:

Sample Label Description Source Label Quantity
8/6/13 D norCB digested with EcoRI and PstI 8/3/13 GE norCB 1
8/6/13 Master Master mix for digestion N/A 1

Results: N/A

Notes:

Stop Time: 9:00 PM

Next: Digestion of plasmids and ligation

Date: 08/06/13 Emily Puleo, Alie Abele

Title: PCR nosZ gene from P. aeruginosa to add iGEM prefix & suffix

Start Time: 7:32 PM

Purpose: To PCR amplify nosZ and add iGEM prefix and suffix

Protocol: LTM ed. 2 pg 48 Exceptions: 1. Final primer concentration <0.1 uM PCR run conditions: Annealing Temp: 65C, elongation time: 5min, template P. aeru 7/30/13

Products:

Sample Label Description Source Label Quantity
8/6/13 A nosZ nosZ gene with iGEM prefix&suffix using 7.5 uL template in 0.5 mL H2O P. aeruginosa 7/30/13 2
8/6/13 F primer nosZ 0.77 uM nosZ forward primer nosZ Forward Primer 1
8/6/13 R primer nosZ 0.8 uM nosZ reverse primer nosZ Reverse Primer 1

Results: N/A

Notes: See 7/31/13 notes for calculations

Stop Time: 9:00 PM

Next: Gel electrophoresis and sequencing

Date: 08/06/13 Emily Puleo, Alie Abele

Title: PCR hmp gene from E. coli to add iGEM prefix & suffix

Start Time: 8:10 PM

Purpose: To PCR amplify hmp and add iGEM prefix and suffix

Protocol: LTM ed. 2 pg 48 Exceptions: 1. Final primer concentration <0.1 uM PCR run conditions: Annealing Temp: 65C, elongation time: 5min, template washed and re-suspended E. coli 7/30/13

Products:

Sample Label Description Source Label Quantity
8/6/13 A hmp hmp gene with iGEM prefix&suffix using 7.5 uL template in 0.5 mL H2O E. coli 7/30/13 2
8/6/13 F primer hmp 10 ng/uL hmp forward primer hmp Forward Primer 1
8/6/13 R primer nosZ 10 ng/uL hmp reverse primer hmp Reverse Primer 1

Results: N/A

Notes: 0.39 mg of F primer + 390 uL of milliQ, diluted 1:100 with milliQ = 10 ng/uL F primer, repeated with 0.36 mg R primer and 360 uL milliQ. NOTE: Corrected math when entered into online notebook, recheck to confirm numbers

Stop Time: 9:00 PM

Next: Gel electrophoresis and sequencing