Berk2006-Sequencing: Difference between revisions
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|iG139 || JL091306 || pJ23019-J23072 #5 ||mini || ca1000 || perfect || [[2006BerkeleyIgemseq-iG139 | iG139]] | |iG139 || JL091306 || pJ23019-J23072 #5 ||mini || ca1000 || perfect || [[2006BerkeleyIgemseq-iG139 | iG139]] | ||
|- | |- | ||
|iG140 || JL091606 || J23077 #1 || mini || ca1000 || | |iG140 || JL091606 || J23077 #1 || mini || ca1000 || good, had to correct the bp bet/ N and X || [[2006BerkeleyIgemseq-iG140 | iG140]] | ||
|- | |- | ||
|iG141 || JL091606 || J23078 #1 || mini ||ca998 || | |iG141 || JL091606 || J23078 #1 || mini ||ca998 || perfect || [[2006BerkeleyIgemseq-iG141 | iG141]] | ||
|- | |- | ||
|iG142 || || || || || || [[2006BerkeleyIgemseq-iG142 | iG142]] | |iG142 || || || || || || [[2006BerkeleyIgemseq-iG142 | iG142]] |
Revision as of 10:54, 19 September 2006
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seq run | date | Construct | clone | Oligo | Result | File Link |
iG001 | JCA_060806 | pSB1A2-J01129 | stock | ca998 | OK read, matches model | iG001 |
iG002 | JCA_060806 | pSB1A2-J01122 | stock | ca998 | OK read, matches model | iG002 |
iG003 | JCA_060806 | pSB1A2-J01122 | stock | ca999 | Failed read | iG003 |
iG004 | BCH_062206 | pSB3C6-J01122-A | miniprep A | ca1000 | the tube was mislabeled and it turns out that the clone was 1022 | iG004 |
iG005 | BCH_062206 | pSB3C6-J01122-A | -80 stock A | ca1000 | parent vector...not a lock | iG005 |
iG006 | JL_062706 | pSB1A2-J23003 | 1 | BBa_G00101 | OK read, matches model | iG006 |
iG007 | JL_062706 | pSB1A2-J23003 | 2 | BBa_G00101 | OK read, matches model | iG007 |
iG008 | JL_062906 | pSB1A2-J01064 | from -80 | ca998 | perfect | iG008 |
iG009 | JL_062906 | pSB3C6-J01093 | ?? | ca1000 | perfect | iG009 |
iG010 | JL_062906 | pSB3C6-J01024 | ?? | ca1000 | sequence is correct but in registry TrajR is reversed | iG010 |
iG011 | JL_062906 | pSB1AK3-J01001 | from -80 | ca998 | perfect | iG011 |
iG012 | JL_063006 | pSB1A2-J01003 | mini-prep | ca998 | Good, but did not get read in the 5' end | iG012 |
iG013 | KAD_070306 | pJ23006-1 | mini-prep | ca998 | Good read, matches model | iG013 |
iG014 | KAD_070306 | pJ23006-2 | mini-prep | ca998 | Good read, matches model | iG014 |
iG015 | KAD_070306 | pJ23004-1 | mini-prep | ca998 | is pJ23006 | iG015 |
iG016 | KAD_070306 | pJ23004-1 | mini-prep | BBa_G00101 | is pJ23006 | iG016 |
iG017 | KAD_070306 | pSB3C6-J01122 | mini-prep | ca1000 | Does not match model | iG017 |
iG018 | KAD_070706 | pJ23006 | mini-prep | ca998 | failed read | iG018 |
iG019 | KAD_070706 | J01063 (Lock1) | mini-prep | ca998 | Does not match model: is basic lock1 part and lacks ptet, rfp, and double terminator | iG019 |
iG020 | KAD_070706 | J01068 (Lock2) | mini-prep | ca998 | Does not match model: is basic lock2 part and lacks ptet, rfp, and double terminator | iG020 |
iG021 | KAD_070706 | pSB3C6-J01122-A3 | mini-prep | ca1000 | perfect | iG021 |
iG022 | KAD_070706 | pSB3C6-J01122-A4 | mini-prep | ca1000 | perfect | iG022 |
iG023 | KAD_071006 | pJ23006 | mini-prep | ca998 | correct | iG023 |
iG024 | KAD_071006 | pSB3C6-J01122-1 | mini-prep | ca1000 | wrong | iG024 |
iG025 | KAD_071006 | pSB1A2-J01129 | mini-prep | ca998 | correct | iG025 |
iG026 | KAD_071006 | pJ23006-I13522-1 | mini-prep | ca998 | correct | iG026 |
iG027 | KAD_071006 | pJ23006-I13522-2 | mini-prep | ca998 | correct | iG027 |
iG028 | KAD_071106 | pJ23006-J23007-3 | miniprep | ca998 | failed read | iG028 |
iG029 | KAD_071106 | pJ23006-J23008-2 | miniprep | ca998 | failed read | iG029 |
iG030 | KAD_071206 | pSB1A2-J01055 | miniprep | ca998 | perfect match | iG030 |
iG031 | KAD_071206 | pSB1A2-J01020 (from Box2) | miniprep | ca998 | point mutation. needs further analysis | iG031 |
iG032 | KAD_071406 | pJ23006-J23008 | miniprep | ca998 | perfect | iG032 |
iG033 | KAD_071406 | pJ23006-J23007 | miniprep | ca998 | perfect | iG033 |
iG034 | BCH_071706 | pJ23006-J23007-2.1 | miniprep | ca998 | perfect | iG034 |
iG035 | BCH-071706 | pJ23006-J23007-3.1 | miniprep | ca998 | only matches for beginning | iG035 |
iG036 | BCH_071706 | pJ23006-J23008-3.1 | miniprep | ca998 | only matches for beginning | iG036 |
iG037 | BCH_071706 | pJ23006-J23008-4.1 | miniprep | ca998 | only matches for beginning | iG037 |
iG038 | BCH_071706 | pJ23006-994Library-1 | miniprep | ca998 | iG038 | |
iG039 | BCH_071706 | pJ23006-994Library-8 | miniprep | ca998 | iG039 | |
iG040 | SIL_072106 | pSB1A2-J23011 | miniprep | ca998 | matches | iG040 |
iG041 | SIL_072106 | pSB1A2-J23013 | miniprep | ca998 | (front) matches | iG041 |
iG042 | SIL_072106 | pSB1A2-J23013 | miniprep | G00101 | (back) matches | iG042 |
iG043 | KAD_072406 | pSB1A2-J01129-B0015-1 (pSB1A2-J23023-1) | miniprep | ca998 | matches model, but has two gaps between the SpeI site and the beginning of the ColEI origin, increased gaps as read starts towards end of read | iG043 |
iG044 | KAD_072406 | pSB1A2-J01129-B0015-2 (pSB1A2-J23023-2) | miniprep | ca998 | matches model, but has a point mutation between the NotI and XbaI sites, a gap between the PstI site and the ColEI origin, a point mutation in the beginning of the ColEI origin, increased gaps towards end of read | iG044 |
iG045 | BCH_072406 | pJ23006-23009-1 | miniprep | ca998 | read drops off short presumably due to the construct's strong secondary structure. we dont know what to do about this. | iG045 |
iG046 | KAD_072606 | pSB1A2-J23029 | miniprep | ca998 | perfect match, but one bp mutation between NotI and XbaI sites | iG046 |
iG047 | KAD_072606 | pACSer2AGGA | PCR | ca1000 | good read, but has several point mutations | iG047 |
iG048 | KAD_072606 | pSB1A3-I13450-1 | miniprep | ca998 | Very close, but a little off. Need to update model | iG048 |
iG049 | SIL_072706 | pSB1A2-J23014 | miniprep | ca998 | matches | iG049 |
iG050 | MF_073106 | pBca1020-Bca1022 lib hit A | miniprep | ca998 | good | iG050 |
iG051 | MF_073106 | pBca1020-Bca1022 lib hit B | miniprep | ca998 | good | iG051 |
iG052 | MF_073106 | pBca1020-Bca1022 lib hit C | miniprep | ca998 | good | iG052 |
iG053 | MF_073106 | pBca1020-Bca1022 lib hit D | miniprep | ca998 | good | iG053 |
iG054 | MF_073106 | pBca1020-Bca1022 lib hit E | miniprep | ca998 | good | iG054 |
iG055 | MF_073106 | pBca1020-Bca1022 lib hit F | miniprep | ca998 | good | iG055 |
iG056 | MF_073106 | pBca1020-Bca1022 lib hit White D7 | miniprep | ca998 | good | iG056 |
iG057 | MF_073106 | pBca1020-Bca1022 lib hit Red F6 | miniprep | ca998 | failed read | iG057 |
iG058 | MF_073106 | pBca1020-Bca1022 lib hit Red D7 | miniprep | ca998 | failed read | iG058 |
iG059 | MF_073106 | pBca1020-Bca1022 lib hit Red A2 | miniprep | ca998 | good | iG059 |
iG060 | KAD_080106 | pSB1A3-J23037-3 | miniprep | ca998 | matches model, one base pair mutation in ColEI | iG060 |
iG061 | KAD_080106 | pSB1A3-J23037-4 | miniprep | ca998 | matches model, one base pair mutation in ColEI | iG061 |
iG062 | bch_080106 | pSB3C6-J23018-1 (part J23019) | miniprep | ca1000 | perfect | iG062 |
iG063 | bch_080106 | pSB3C6-J23018-2 (part J23019) | miniprep | ca1000 | perfect | iG063 |
iG064 | bch_080106 | pJ23006-J23036-1 | miniprep | ca998 | perfect | iG064 |
iG065 | bch_080106 | pJ23006-J23035-1 | miniprep | ca998 | wrong, recomb excision product | iG065 |
iG066 | bch_080106 | pJ23006-23034-3 | miniprep | ca998 | wrong, recomb excision product | iG066 |
iG067 | bch_080106 | pJ23006-J23033-1 | miniprep | ca998 | wrong, recomb excision product | iG067 |
iG068 | bch_080106 | pJ23006-J23032-1 | miniprep | ca998 | perfect | iG068 |
iG069 | bch_080106 | pJ23006-J23031-1 | miniprep | ca998 | perfect | iG069 |
iG070 | bch_080106 | pJ23006-J23030-1 | miniprep | ca998 | deletion at SpeI site | iG070 |
iG071 | KAD_080206 | pSB1A2-J23029-2D | miniprep | ca998 | good | iG071 |
iG072 | KAD_080206 | pSB1A2-J23029-4D | miniprep | ca998 | good | iG072 |
iG073 | KAD_080306 | pSB3C6-Bca1025-1 | miniprep | KB009 | failed read | iG073 |
iG074 | KAD_080306 | pSB3C6-Bca1025-2 | miniprep | KB009 | failed read | iG074 |
iG075 | SIL_080306 | pSB1A2-J23038-1 | miniprep | ca998 | failed read | iG075 |
iG076 | SIL_080306 | pSB1A2-J23038-2 | miniprep | ca998 | failed read | iG076 |
iG077 | SIL_080306 | pSB1A2-J23028-3 | miniprep | ca998 | perfect | iG077 |
iG078 | SIL_080306 | pSB1A2-J23028-4 | miniprep | ca998 | good | iG078 |
iG079 | bch_080306 | pS23006- J23009-1 | mini | G00101 | read failed due to secondary structure probably | iG079 |
iG080 | bch_080306 | pSB3C6- J23018 | midi | ca1001 | iG080 | |
iG081 | kad_080806 | psB3C6- bca1025-1 | mini | ca1001 | perfect | iG081 |
iG082 | kad_080806 | psB3C6- bca1025-2 | mini | ca1001 | point mutation | iG082 |
iG083 | BCH_080806 | pJ23006-J23043-1 | mini | ca998 | iG083 | |
iG084 | BCH_080806 | pJ23006-J23044-1 | mini | ca998 | should have used G00101 instead because of the secondary structure of key3d | iG084 |
iG085 | MF_080906 | pSB1A2-J23038 | mini | ca998 | wrong | iG085 |
iG086 | KAD_080906 | pSB1A2-J23046-1 (rename me as J23063-1) | mini | ca998 | matches Pcon-Ser2AGGA #J23063 | iG086 |
iG087 | KAD_080906 | pSB1A2-J23046-2 (rename me as J23063-2) | mini | ca998 | matches Pcon-Ser2AGGA #J23063 | iG087 |
iG088 | KAD_080906 | pSB1A2-J23061-2 (rename me as J23064-2) | mini | ca998 | matches Pcon-Ser2AGGA #J23054 | iG088 |
iG089 | KAD_080906 | pSB1A2-J23061-4 (rename me as J23064-4) | mini | ca998 | matches Pcon-Ser2AGGA #J23064 | iG089 |
iG090 | bch_080906 | pJ23006-J23044-1 | mini | BBa-G00101 | iG090 | |
iG091 | BCH_081006 | pSB1A2-J23041-1 | mini | ca998 | iG091 | |
iG092 | BCH_081006 | pSB1A2-J23042-1 | mini | ca998 | iG092 | |
iG093 | WRB_081106 | pSB1A2-J23040 | mini | ca998 | iG093 | |
iG094 | WRB_081106 | pSB1AK3-J23039(5) | mini | ca998 | iG094 | |
iG095 | WRB_081106 | pSB1AK3-J23039(6) | mini | ca998 | iG095 | |
iG096 | MF_081106 | pBca1020-Bca1022 hit A | mini | ca998 | excellent | iG096 |
iG097 | MF_081106 | pBca1020-Bca1022 hit B | mini | ca998 | excellent | iG097 |
iG098 | MF_081106 | pBca1020-Bca1022 hit D | mini | ca998 | excellent | iG098 |
iG099 | MF_081106 | pBca1020-Bca1022 hit A2 | mini | ca998 | excellent | iG099 |
iG100 | MF_081106 | pBca1020-Bca1022 hit A5 | mini | ca998 | excellent | iG100 |
iG101 | MF_061106 | pBca1020-Bca1022 hit F4 | mini | ca998 | excellent | iG101 |
iG102 | KAD_081106 | pSB3C6-J23032-1 | mini | ca1000 | perfect | iG102 |
iG103 | KAD_081106 | pSB3C6-J23031-1 | mini | ca1000 | perfect | iG103 |
iG104 | KAD_081106 | pSB3C6-J12036-1 | mini | ca1000 | this came out completely wrong. genomic DNA was amplified and inserted some how. | iG104 |
iG105 | BCH_081406 | pJ23006-J23022-1 | mini | G00101 | good, b0015 present | iG105 |
iG106 | MF_081506 | pBca1020-Bca1022 lib hit E10 | mini | ca998 | iG106 | |
iG107 | MF_081506 | pBca1020-Bca1022 lib hit F12 | mini | ca998 | iG107 | |
iG108 | MF_081506 | pBca1020-Bca1022 lib hit B9 | mini | ca998 | iG108 | |
iG109 | MF_081506 | pBca1020-Bca1022 lib hit C5 | mini | ca998 | iG109 | |
iG110 | MF_081506 | pBca1020-Bca1022 lib hit C1 | mini | ca998 | iG110 | |
iG111 | MF_081506 | pBca1020-Bca1022 lib hit RC2 | mini | ca998 | iG111 | |
iG112 | MF_081506 | pBca1020-Bca1022 lib hit WD7 | mini | ca998 | iG112 | |
iG113 | MF_081506 | pBca1020-Bca1022 lib hit WC2 | mini | ca998 | iG113 | |
iG114 | MF_081506 | pBca1020-Bca1022 lib hit B10 | mini | ca998 | iG114 | |
iG115 | MF_081506 | pBca1020-Bca1022 lib hit E11 | mini | ca998 | iG115 | |
iG116 | MF_081506 | pBca1020-Bca1022 lib hit F3 | mini | ca998 | iG116 | |
iG117 | MF_081506 | pBca1020-Bca1022 lib hit F6 | mini | ca998 | iG117 | |
iG118 | MF_081506 | pBca1020-Bca1022 lib hit E8 | mini | ca998 | iG118 | |
iG119 | MF_081506 | pBca1020-Bca1022 lib hit H12 | mini | ca998 | iG119 | |
iG120 | MF_081506 | pBca1020-Bca1022 lib hit E1 | mini | ca998 | iG120 | |
iG121 | MF_081506 | pBca1020-Bca1022 lib hit RD7 | mini | ca998 | iG121 | |
iG122 | BCH_081506 | pJ23006-J23066-1 | mini | G00101 | iG122 | |
iG123 | MF_081606 | pSB1A2-J23038-2 | mini | ca998 | messy | iG123 |
iG124 | MF_081606 | pSB1A2-J23038-3 | mini | ca998 | messy | iG124 |
iG125 | MF_081606 | pSB1A2-J23038-4 | mini | ca998 | very messy read, but is correct (barring any unlikely point mutations) | iG125 |
iG126 | SIL_081706 | pJ23006-J23061-1 | mini | ca998 | perfect | iG126 |
iG127 | SIL_081706 | pJ23006-J23061-2 | mini | ca998 | duplicatin of bamHI/HindIII region, would still be usable, though | iG127 |
iG128 | WRB_081706 | pSB1A2-J23040 | mini | G00101 | correct | iG128 |
iG129 | SIL_082406 | pJ23006-J23070 #1 | mini | ca998 | perfect | iG129 |
iG130 | SIL_082406 | pJ23006-J23062 #1 | mini | ca998 | perfect, had to recreate sequence files, though | iG130 |
iG131 | JL082506 | pSB3C6-J23071 #1 | mini | ca1000 | failed read | iG131 |
iG132 | JL082506 | pSB3C6-J23071 #2 | mini | ca1000 | perfect | iG132 |
iG133 | JL090806 | pSB1AK3-J23075 #1 | mini | ca998 | no promoter | iG133 |
iG134 | JL090806 | pSB1AK3-J23075 #2 | mini | ca998 | failed read | iG134 |
iG135 | JL090806 | pSB1AK3-J23074 #1 | mini | ca998 | no promoter | iG135 |
iG136 | JL090806 | pSB1AK3-J23074 #2 | mini | ca998 | no promoter | iG136 |
iG137 | Jl090806 | psB1A2-J23119 | mini | ca998 | perfect | iG137 |
iG138 | SL090806 | pSB3C6-J23072-2 | mini | ca1000 | no RFP | iG138 |
iG139 | JL091306 | pJ23019-J23072 #5 | mini | ca1000 | perfect | iG139 |
iG140 | JL091606 | J23077 #1 | mini | ca1000 | good, had to correct the bp bet/ N and X | iG140 |
iG141 | JL091606 | J23078 #1 | mini | ca998 | perfect | iG141 |
iG142 | iG142 | |||||
iG143 | iG143 | |||||
iG144 | iG144 | |||||
iG145 | iG145 | |||||
iG146 | iG146 | |||||
iG147 | iG147 | |||||
iG148 | iG148 | |||||
iG149 | iG149 | |||||
iG150 | iG150 | |||||
iG151 | iG151 | |||||
iG152 | iG152 | |||||
iG153 | iG153 | |||||
iG154 | iG154 | |||||
iG155 | iG155 | |||||
iG156 | iG156 | |||||
iG157 | iG157 | |||||
iG158 | iG158 | |||||
iG159 | iG159 | |||||
iG160 | iG160 | |||||
iG161 | iG161 | |||||
iG162 | iG162 | |||||
iG163 | iG163 | |||||
iG164 | iG164 | |||||
iG165 | iG165 | |||||
iG166 | iG166 | |||||
iG167 | iG167 | |||||
iG168 | iG168 | |||||
iG169 | iG169 | |||||
iG170 | iG170 | |||||
iG171 | iG171 | |||||
iG172 | iG172 | |||||
iG173 | iG173 | |||||
iG174 | iG174 | |||||
iG175 | iG175 | |||||
iG176 | iG176 | |||||
iG177 | iG177 | |||||
iG178 | iG178 | |||||
iG179 | iG179 | |||||
iG180 | iG180 | |||||
iG181 | iG181 | |||||
iG182 | iG182 | |||||
iG183 | iG183 | |||||
iG184 | iG184 | |||||
iG185 | iG185 | |||||
iG186 | iG186 | |||||
iG187 | iG187 | |||||
iG188 | iG188 | |||||
iG189 | iG189 | |||||
iG190 | iG190 | |||||
iG191 | iG191 | |||||
iG192 | iG192 | |||||
iG193 | iG193 | |||||
iG194 | iG194 | |||||
iG195 | iG195 | |||||
iG196 | iG196 | |||||
iG197 | iG197 | |||||
iG198 | iG198 | |||||
iG199 | iG199 | |||||
iG200 | iG200 | |||||
iG201 | iG201 | |||||
iG202 | iG202 | |||||
iG203 | iG203 | |||||
iG204 | iG204 | |||||
iG205 | iG205 | |||||
iG206 | iG206 | |||||
iG207 | iG207 | |||||
iG208 | iG208 | |||||
iG209 | iG209 | |||||
iG210 | iG210 | |||||
iG211 | iG211 | |||||
iG212 | iG212 | |||||
iG213 | iG213 | |||||
iG214 | iG214 | |||||
iG215 | iG215 | |||||
iG216 | iG216 | |||||
iG217 | iG217 | |||||
iG218 | iG218 | |||||
iG219 | iG219 | |||||
iG220 | iG220 | |||||
iG221 | iG221 | |||||
iG222 | iG222 | |||||
iG223 | iG223 | |||||
iG224 | iG224 | |||||
iG225 | iG225 | |||||
iG226 | iG226 | |||||
iG227 | iG227 | |||||
iG228 | iG228 | |||||
iG229 | iG229 | |||||
iG230 | iG230 | |||||
iG231 | iG231 | |||||
iG232 | iG232 | |||||
iG233 | iG233 | |||||
iG234 | iG234 | |||||
iG235 | iG235 | |||||
iG236 | iG236 | |||||
iG237 | iG237 | |||||
iG238 | iG238 | |||||
iG239 | iG239 | |||||
iG240 | iG240 | |||||
iG241 | iG241 | |||||
iG242 | iG242 | |||||
iG243 | iG243 | |||||
iG244 | iG244 | |||||
iG245 | iG245 | |||||
iG246 | iG246 | |||||
iG247 | iG247 | |||||
iG248 | iG248 | |||||
iG249 | iG249 | |||||
iG250 | iG250 | |||||
iG251 | iG251 | |||||
iG252 | iG252 | |||||
iG253 | iG253 | |||||
iG254 | iG254 | |||||
iG255 | iG255 | |||||
iG256 | iG256 | |||||
iG257 | iG257 | |||||
iG258 | iG258 | |||||
iG259 | iG259 | |||||
iG260 | iG260 | |||||
iG261 | iG261 | |||||
iG262 | iG262 | |||||
iG263 | iG263 | |||||
iG264 | iG264 | |||||
iG265 | iG265 | |||||
iG266 | iG266 | |||||
iG267 | iG267 | |||||
iG268 | iG268 | |||||
iG269 | iG269 | |||||
iG270 | iG270 | |||||
iG271 | iG271 | |||||
iG272 | iG272 | |||||
iG273 | iG273 | |||||
iG274 | iG274 | |||||
iG275 | iG275 | |||||
iG276 | iG276 | |||||
iG277 | iG277 | |||||
iG278 | iG278 | |||||
iG279 | iG279 | |||||
iG280 | iG280 | |||||
iG281 | iG281 | |||||
iG282 | iG282 | |||||
iG283 | iG283 | |||||
iG284 | iG284 | |||||
iG285 | iG285 | |||||
iG286 | iG286 | |||||
iG287 | iG287 | |||||
iG288 | iG288 | |||||
iG289 | iG289 | |||||
iG290 | iG290 | |||||
iG291 | iG291 | |||||
iG292 | iG292 | |||||
iG293 | iG293 | |||||
iG294 | iG294 | |||||
iG295 | iG295 | |||||
iG296 | iG296 | |||||
iG297 | iG297 | |||||
iG298 | iG298 | |||||
iG299 | iG299 | |||||
iG300 | iG300 | |||||
iG301 | iG301 | |||||
iG302 | iG302 | |||||
iG303 | iG303 | |||||
iG304 | iG304 | |||||
iG305 | iG305 | |||||
iG306 | iG306 | |||||
iG307 | iG307 | |||||
iG308 | iG308 | |||||
iG309 | iG309 | |||||
iG310 | iG310 | |||||
iG311 | iG311 | |||||
iG312 | iG312 | |||||
iG313 | iG313 | |||||
iG314 | iG314 | |||||
iG315 | iG315 | |||||
iG316 | iG316 | |||||
iG317 | iG317 | |||||
iG318 | iG318 | |||||
iG319 | iG319
|