# Difference between revisions of "Ashley Rhoades Week 9"

## Week 9 Journal

### Part One

These are the number of genes that fall into each significance level for each time period.

• T15
• P<0.05 - 781
• P<0.01 - 218
• P< 0.001 - 21
• P<0.0001 - 1
• T30
• P<0.05 - 1539
• P<0.01 - 456
• P< 0.001 - 55
• P<0.0001 - 2
• T60
• P<0.05 - 1559
• P<0.01 - 384
• P< 0.001 - 51
• P<0.0001 - 6
• T90
• P<0.05 - 538
• P<0.01 - 129
• P< 0.001 - 9
• P<0.0001 - 1
• T120
• P<0.05 - 564
• P<0.01 - 114
• P< 0.001 - 16
• P<0.0001 - 5

### Part Two

These are the number of genes that fall under a p<0.05 significance threshold with the Bonferroni correction.

• T15: 1 value
• T30: 0
• T60: 2
• T90: 1
• T120: 0

### Part 3

These are the average log folds with significance p<0.05.

• T15
• Greater than zero: 437
• Less than zero: 771
• Greater than .25: 402
• Less than -.25: 256
• T30
• Greater than zero: 713
• Less than zero: 826
• Greater than .25: 673
• Less than -.25: 770
• T60
• Greater than zero: 760
• Less than zero: 799
• Greater than .25: 727
• Less than -.25 : 745
• T90
• Greater than zero: 319
• Less than zero: 219
• Greater than .25: 277
• Less than -.25: 194
• T120
• Greater than zero: 332
• Less than zero: 232
• Greater than .25: 245
• Less than -.25: 170

### Part 4

This is the data for the gene NSR1.

Average at time 15: 1.2 P value: 0.0046

Average at time 30: 1.98 P value: 0.0180

Average at time 60: 1.96 P value: 0.0151

Average at time 90: -0.75 P value: 0.0676

Average at time 120: -0.63 P value: 0.1601 There were significant changes at time 15,30, and 60 for a significance threshold of p<0.05.

### Part 5

The gene with the smallest p value is YPR059C with p=4.73816675697583E-06. Unfortunately in the database little to nothing is known about this gene. The only information available was that it most likely does not code for a protein.