# 6.021/Notes/2006-10-04

## Contents

## Ion Transport

- Major constituents of cells
- important functions
- charge is substrate for neural communication
- every charged particle (in principle) affects every other ion
- more complicated than other mechanisms

## Mechanisms

2 distinct mechanisms of diffusion and drift

### Diffusion

Given by Fick's law [math]\phi_n = -D_n\frac{\partial c_n}{\partial x}[/math]

### Drift

- Effect of electrical forces on montion of charged particles.
- Electric Field (vector field) [math]E(x,t)[/math]
- force on particle [math]f_p = QE(x,t) = z_neE(x,t)[/math] where [math]z_n[/math] is valence and [math]e\approx 1.6\cdot 10^{-19}[/math] C.
- Motions of small particles in water are viscosity dominated (Stokes 1855)

Forces | Size scale | Time scale |

inertial (F=ma) | [math]radius^3[/math] | acceleration |

viscosity | [math]radius[/math] | velocity |

[math]v\propto f_p = u_p f_p = u_n f[/math] where [math]u_p[/math] is mechanical mobility in units of velocity/force, [math]u_n[/math] is the molar mechanical mobility and [math]f[/math] becomes the force on a mole of particle.

For charged particles: [math]v=u_nz_neN_AE(x,t)=u_nz_nFE(x,t)[/math] ([math]F=eN_A[/math] which is Faradya's number) = charge/mole about 96500 C/mol.

[math]D_n=u_nRT[/math]: Einstein's relation

Flux due to drift: [math]\phi_n = \lim_{A\rightarrow 0 ; \Delta t\rightarrow 0}\frac{c_n(x,t)A\Delta x}{A\Delta t} = vc_n(x,t)[/math]

[math]\phi_n = c_n(x,t)u_nz_nFE(x,t) = -c_nu_nz_nF\frac{\partial\psi}{\partial x}[/math] where [math]E=-\frac{\partial\psi}{\partial x}[/math] (electric field depends on the potential gradient)

The flux of ions is the current density given by [math]J_n = z_nF\phi_n[/math] This is in units of current/area and is easier to measure than flux.

### Combined transport

Combining diffusion and drift to get **Nernst-Planck Equation**:

[math]J_n = -z_nFD_n\frac{\partial c_n}{\partial x}-u_nz_n^2F^2c_n\frac{\partial\psi}{\partial x}[/math]

Note that this is really just a combination of Fick's and Ohm's Laws.

**Continuity:** (needed to solve equations just like in other transport mechanisms)

[math]\frac{\partial\phi_n}{\partial x} = -\frac{\partial c_n}{\partial t}[/math] or equivalently

[math]\frac{\partial J_n}{\partial x} = -z_nF\frac{\partial c_n}{\partial t}[/math]

Unlike diffusion, also need one more equation for [math]\psi[/math] but this electric potential depends on all particles.

From Gauss' law: [math]\frac{\partial E}{\partial x} = \frac{1}{\epsilon}\rho(x,t) = \frac{1}{\epsilon}\sum_n z_nFc_n(x,t)[/math] where [math]\epsilon[/math] is the permitivity and [math]\rho[/math] is the charge density.

This leads to **Poisson's Equation**
[math]\frac{\partial^2 \psi}{\partial x^2} = -\frac{1}{\epsilon}\sum_n z_nFc_n(x,t)[/math]

## Electroneutrality

- In a solution with some charge, after some time, all charges go to the edges away from each other.
- [math]\tau_r[/math] is the relaxation time and is on the order of nanoseconds for physiological salines
- Similarly, in space, a region around the charge is formed that negates the charge. This is known as the Debye layer and has a thickness of around a nanometer.
- Thus for times much greater than the relaxation time and distances much greater than the Debye distance, we can assume electroneutrality of the solution.