User:Jarle Pahr/dbSNP
Notes on the dbSNP database:
dbSNP Classic view: http://www.ncbi.nlm.nih.gov/projects/SNP/
dbSNP Entrez:http://www.ncbi.nlm.nih.gov/snp
FTP: ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/
Question: dbSNP : best way to obtain data on SNPs: http://www.biostars.org/p/1332/
OpenHelix dbSNP tutorial: http://www.openhelix.com/cgi/tutorialInfo.cgi?id=39
http://pga.gs.washington.edu/presentations/db_interface_tutorial.pdf
http://www.niehs.nih.gov/news/assets/docs_f_o/interactive_tutorial_i_database_interfaces_all_.pdf
https://cgsmd.isi.edu/dbsnpq/doc.php
NCBI Handbook Chapter 5 - The Single Nucleotide Polymorphism Database (dbSNP) of Nucleotide Sequence Variation:
http://www.ncbi.nlm.nih.gov/books/NBK21088/
http://massgenomics.org/2012/01/the-current-state-of-dbsnp.html
http://www.snpator.org/HelpManual/loaddbsnpinfo.htm
http://blog.openhelix.eu/?tag=dbsnp&paged=2
http://seqanswers.com/forums/archive/index.php/t-13865.html
http://www.ncbi.nlm.nih.gov/books/NBK44455/
http://rbaltman.wordpress.com/tag/dbsnp/
dbSNP fact sheet: ftp://ftp.ncbi.nih.gov/pub/factsheets/Factsheet_SNP.pdf
Concepts/terminology
Access
http://www.ncbi.nlm.nih.gov/projects/SNP/batchquery.html
http://www.biostars.org/p/5636/
http://seqanswers.com/forums/archive/index.php/t-15863.html
http://osdir.com/ml/python.bio.general/2006-03/msg00019.html
http://hongqinlab.blogspot.no/2013/02/how-to-obtain-ncbi-dbsnp-genotype-data.html
http://osdir.com/ml/python.bio.general/2006-03/msg00022.html
http://www.biostars.org/p/64897/
http://www.bioconductor.org/packages/2.12/data/annotation/
Bibliography
dbSNP: the NCBI database of genetic variation: http://nar.oxfordjournals.org/content/29/1/308.full
Single nucleotide differences (SNDs) in the dbSNP database may lead to errors in genotyping and haplotyping studies.: http://www.ncbi.nlm.nih.gov/pubmed/19877174
New tools and methods for direct programmatic access to the dbSNP relational database: http://nar.oxfordjournals.org/content/39/suppl_1/D901.full