User:Jarle Pahr/SAM
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Notes on the Sequence/Alignment Map (SAM) format:
http://samtools.sourceforge.net/SAM1.pdf
http://genome.sph.umich.edu/wiki/SAM
SAM to fasta: http://sourceforge.net/projects/sam2fasta/?source=directory
Explain Samtools like I am a 5 year old: http://seqanswers.com/forums/showthread.php?p=113194#post113194