User:Jarle Pahr/Nested feedback loops
Notes on nested feedback loops:
Interlinked Fast and Slow Positive Feedback Loops Drive Reliable Cell Decisions. Onn Brandman1, James E. Ferrell Jr, Rong Li and Tobias Meyer1. http://www.sciencemag.org/content/310/5747/496.full
They "created models of positive feedback switches containing either a single positive feedback loop (Fig. 2A) or two interlinked loops (Fig. 2B)."
Citing articles:
Models of signalling networks – what cell biologists can gain from them and give to them: http://jcs.biologists.org/content/126/9/1913.full
Building biological memory by linking positive feedback loops: http://www.pnas.org/content/107/1/175.full
Ordered cyclic motifs contribute to dynamic stability in biological and engineered networks: http://www.pnas.org/content/105/49/19235.abstract
Tuning the Activation Threshold of a Kinase Network by Nested Feedback Loops: www.sciencemag.org/cgi/content/abstract/324/5926/509
Feedback Loops Shape Cellular Signals in Space and Time: http://www.sciencemag.org/content/322/5900/390.abstract
Subnetwork analysis reveals dynamic features of complex (bio)chemical networks: http://www.pnas.org/content/104/49/19175.full
Mechanistic mathematical model of polarity in yeast: http://www.molbiolcell.org/content/23/10/1998.full
The Cell Cycle Switch Computes Approximate Majority: http://www.nature.com/srep/2012/120913/srep00656/full/srep00656.html
Asymmetric positive feedback loops reliably control biological responses.: http://www.ncbi.nlm.nih.gov/pubmed/22531117
Unraveling the design principle for motif organization in signaling networks.: http://www.ncbi.nlm.nih.gov/pubmed/22164309
Simple rules for complex processes: new lessons from the budding yeast cell cycle.: http://www.sciencedirect.com/science/article/pii/S1097276511005752
A Comparison of Mathematical Models for Polarization of Single Eukaryotic Cells in Response to Guided Cues: http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001121
Positive-feedback loops in cell cycle progression. http://www.ncbi.nlm.nih.gov/pubmed/19818353
Interlinked dual-time feedback loops can enhance robustness to stochasticity and persistence of memory. http://www.ncbi.nlm.nih.gov/pubmed/19391966
Feedback regulation of opposing enzymes generates robust, all-or-none bistable responses. http://www.ncbi.nlm.nih.gov/pubmed/18364225
Coupled feedback loops form dynamic motifs of cellular networks. http://www.ncbi.nlm.nih.gov/pubmed/17951298
Boolean dynamics of biological networks with multiple coupled feedback loops. http://www.ncbi.nlm.nih.gov/pubmed/17259267
Other:
Coupling between feedback loops in autoregulatory networks affects bistability range, open-loop gain and switching times.: http://www.ncbi.nlm.nih.gov/pubmed/23011599