User:Jarle Pahr/Nested feedback loops

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Notes on nested feedback loops:


Interlinked Fast and Slow Positive Feedback Loops Drive Reliable Cell Decisions. Onn Brandman1, James E. Ferrell Jr, Rong Li and Tobias Meyer1. http://www.sciencemag.org/content/310/5747/496.full

They "created models of positive feedback switches containing either a single positive feedback loop (Fig. 2A) or two interlinked loops (Fig. 2B)."

Citing articles:

Models of signalling networks – what cell biologists can gain from them and give to them: http://jcs.biologists.org/content/126/9/1913.full


Building biological memory by linking positive feedback loops: http://www.pnas.org/content/107/1/175.full


Ordered cyclic motifs contribute to dynamic stability in biological and engineered networks: http://www.pnas.org/content/105/49/19235.abstract

Tuning the Activation Threshold of a Kinase Network by Nested Feedback Loops: www.sciencemag.org/cgi/content/abstract/324/5926/509


Feedback Loops Shape Cellular Signals in Space and Time: http://www.sciencemag.org/content/322/5900/390.abstract


Subnetwork analysis reveals dynamic features of complex (bio)chemical networks: http://www.pnas.org/content/104/49/19175.full


Mechanistic mathematical model of polarity in yeast: http://www.molbiolcell.org/content/23/10/1998.full


The Cell Cycle Switch Computes Approximate Majority: http://www.nature.com/srep/2012/120913/srep00656/full/srep00656.html

Asymmetric positive feedback loops reliably control biological responses.: http://www.ncbi.nlm.nih.gov/pubmed/22531117

Unraveling the design principle for motif organization in signaling networks.: http://www.ncbi.nlm.nih.gov/pubmed/22164309

Simple rules for complex processes: new lessons from the budding yeast cell cycle.: http://www.sciencedirect.com/science/article/pii/S1097276511005752


A Comparison of Mathematical Models for Polarization of Single Eukaryotic Cells in Response to Guided Cues: http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001121

Positive-feedback loops in cell cycle progression. http://www.ncbi.nlm.nih.gov/pubmed/19818353

Interlinked dual-time feedback loops can enhance robustness to stochasticity and persistence of memory. http://www.ncbi.nlm.nih.gov/pubmed/19391966

Feedback regulation of opposing enzymes generates robust, all-or-none bistable responses. http://www.ncbi.nlm.nih.gov/pubmed/18364225

Coupled feedback loops form dynamic motifs of cellular networks. http://www.ncbi.nlm.nih.gov/pubmed/17951298

Boolean dynamics of biological networks with multiple coupled feedback loops. http://www.ncbi.nlm.nih.gov/pubmed/17259267

Other:

Coupling between feedback loops in autoregulatory networks affects bistability range, open-loop gain and switching times.: http://www.ncbi.nlm.nih.gov/pubmed/23011599

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