User:Jared Koelling
http://openwetware.org/wiki/840:153g/2008
Part-only sequence for BBa_J45120(1292 bp)
tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcactactagagtcacacaggaaagtactagatggaagttgttgaagttc ttcacatgaatggaggaaatggagacagtagctatgcaaacaattctttggttcagcaaaaggtgattctcatgacaaagccaataactgagcaagccat gattgatctctacagcagcctctttccagaaaccttatgcattgcagatttgggttgttctttgggagctaacactttcttggtggtctcacagcttgtt aaaatagtagaaaaagaacgaaaaaagcatggttttaagtctccagagttttattttcacttcaatgatcttcctggcaatgattttaatacactttttc agtcactgggggcatttcaagaagatttgagaaagcatataggggaaagctttggtccatgttttttcagtggagtgcctggttcattttatactagact tttcccttccaaaagtttacattttgtttactcctcctacagtctcatgtggctatctcaggtgcctaatgggattgaaaataacaagggaaacatttac atggcaagaacaagccctctaagtgttattaaagcatactacaagcaatatgaaatagatttttcaaattttctcaagtaccgttcagaggaattgatga aaggtggaaagatggtgttaacactcctaggtagagaaagtgaggatcctactagcaaagaatgctgttacatttgggagcttctagccatggccctcaa taagttggttgaagagggattgataaaagaagagaaagtagatgcattcaatattcctcaatacacaccatcaccagcagaagtaaagtacatagttgag aaggaaggatcattcaccattaatcgcttggaaacatcaagagttcattggaatgcttctaataatgagaagaatggtggttacaatgtgtcaaggtgca tgagagctgtggctgagcctttgcttgtcagccactttgacaaggaattgatggatttagtgttccacaagtacgaagagattgtttctgattgcatgtc caaagagaatactgagtttataaatgtcatcatctccttgaccaaaataaattaatactagagccaggcatcaaataaaacgaaaggctcagtcgaaaga ctgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata
Wintergreen – forward and reverse primer #1
Forward Primer Sequence: ACTACTAGAGTCACACAGGAAAGTA
Primer Start Position: 53 Primer Length: 25
Primer TM: 54.2 ºC Primer Self Any: 6.0
Primer GC %: 40.0 % Primer Self End: 2.0
Primer End Stability: 4.30 Primer Penalty: 16.75
Reverse Primer Sequence: TCTAGTAGAGAGCGTTCACCGACAA
Primer Start Position: 1250 Primer Length: 25 Primer TM: 58.6 ºC Primer Self Any: 7.0 Primer GC %: 48.0 % Primer Self End: 2.0 Primer End Stability: 5.19 Primer Penalty: 4.39
Forward primer 1 will have restriction site Xba1 added (TCTAGA)with 4 random nucleotides added for the sequence of AACATCTAGA
Reverse primer 1 will have restriction site Spe1 added (ACTAGT) with 4 random nucleotides added for the sequence of TAATACTAGT
For a total forward primer 1 of AACATCTAGAACTACTAGAGTCACACAGGAAAGTA For a total reverse primer 1 of TAATACTAGTTCTAGTAGAGAGCGTTCACCGACAA
tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcactactagagtcacacaggaaagtactagatggaagttgttgaagttc ttcacatgaatggaggaaatggagacagtagctatgcaaacaattctttggttcagcaaaaggtgattctcatgacaaagccaataactgagcaagccat gattgatctctacagcagcctctttccagaaaccttatgcattgcagatttgggttgttctttgggagctaacactttcttggtggtctcacagcttgtt aaaatagtagaaaaagaacgaaaaaagcatggttttaagtctccagagttttattttcacttcaatgatcttcctggcaatgattttaatacactttttc agtcactgggggcatttcaagaagatttgagaaagcatataggggaaagctttggtccatgttttttcagtggagtgcctggttcattttatactagact tttcccttccaaaagtttacattttgtttactcctcctacagtctcatgtggctatctcaggtgcctaatgggattgaaaataacaagggaaacatttac atggcaagaacaagccctctaagtgttattaaagcatactacaagcaatatgaaatagatttttcaaattttctcaagtaccgttcagaggaattgatga aaggtggaaagatggtgttaacactcctaggtagagaaagtgaggatcctactagcaaagaatgctgttacatttgggagcttctagccatggccctcaa taagttggttgaagagggattgataaaagaagagaaagtagatgcattcaatattcctcaatacacaccatcaccagcagaagtaaagtacatagttgag aaggaaggatcattcaccattaatcgcttggaaacatcaagagttcattggaatgcttctaataatgagaagaatggtggttacaatgtgtcaaggtgca tgagagctgtggctgagcctttgcttgtcagccactttgacaaggaattgatggatttagtgttccacaagtacgaagagattgtttctgattgcatgtc caaagagaatactgagtttataaatgtcatcatctccttgaccaaaataaattaatactagagccaggcatcaaataaaacgaaaggctcagtcgaaaga ctgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata
Wintergreen -- forward and reverse primer #2 Forward Primer Sequence: TGAGCACTACTAGAGTCACACAGG Primer Start Position: 48 Primer Length: 24 Primer TM: 57.3 ºC Primer Self Any: 7.0 Primer GC %: 50.0 % Primer Self End: 1.0 Primer End Stability: 6.01 Primer Penalty: 2.69
Reverse Primer Sequence: AGTAGAGAGCGTTCACCGACAAAC Primer Start Position: 1247 Primer Length: 24 Primer TM: 58.5 ºC Primer Self Any: 4.0 Primer GC %: 50.0 % Primer Self End: 2.0 Primer End Stability: 4.89 Primer Penalty: 1.53
Forward primer 2 will have restriction site Xba1 added (TCTAGA) with 4 random nucleotides added for the sequence of TAATTCTAGA Reverse primer 2 will have restriction site Pst1 added (CTGCAG) with 4 random nucleotides added for the sequence of TAATCTGCAG
For a total forward primer 2 of TAATTCTAGATGAGCACTACTAGAGTCACACAGG For a total reverse primer 2 of TAATCTGCAGAGTAGAGAGCGTTCACCGACAAAC