User:Bill Flanagan

From OpenWetWare

My name is Bill Flanagan. I'm the Senior Technology Developer at OpenWetWare. I'm located at MIT in the Department of Biology, Endy Lab. My background is in building online collaboration systems.

I look forward to learning how biologists do your work. I'll do as much as I can to translate what I learn into programs and systems that make OpenWetWare more useful to all of you.

Thanks!

Bill Flanagan

Endy/Silver Lab(s) Regatta 2008

What we're doing...

Contact

Email via OpenWetware.org: Click Here

OpenWetWare.org Talk: Click Here

My Images

Images uploaded by Bill Flanagan

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Afp2006-banner.gif 15,989 bytes	OWWLabNotebook100.pn... 15,873 bytes	Feedback.png 215 bytes	Shout.png 409 bytes
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PortableSigner.MainS... 55,257 bytes	PortableSigner.About... 24,576 bytes

Current Projects

UMS

Upgrade the current User Management System. The software works well but is in need of some "under the hood" work to integrate it more closely into OWW's underlying MediaWiki software.

OWW Lab Notebook

Link: OWW Lab Notebook

Interesting Links

BioJava

Link: BioJava

project dedicated to providing a Java framework for processing biological data. It include objects for manipulating biological sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and powerful analysis and statistical routines including a dynamic programming toolkit.

BioJava is used in several real-world bioinformatics applications and has been used for bioinformatics analysis in a number of published studies.

Bitnami

Link: Bitnami

MediaWiki Extension Matrix

Link: Mediawiki Extension Matrix

PHP Tube: PHP Upload class for YouTube

Link: [1]

MediaWiki: Magic Words

Link: Magic Words

DNASis SmartNote

MiraiBio has introduced a free lab notebook on their site free for all users. You can check it out at http://smartnote.miraibio.com. It's well worth checking out.

SmartNote is a real Web 2.0 application. It relies heavily on Javascript using the Dojo.js Javascript library for much of its interaction. It has many "snap-in" tools for doing analysis of DNA sequences. One of the nice features it has is a genome annotation tool. I'm particularly interested in people's reactions to this particular feature. This is their cntact info:

MiraiBio (a Hitachi subsidiary) 601 Gateway Blvd. Suite 100 South San Francisco, CA 94080 800-624-6176 www.miraibio.com

Youtube video:

Blip TV

Click To Play

Embedded Blip TV Player

OWW Statistics

• Current Version: 1.12.0
• Number of edits: 215760
• Number of articles: 8852
• Number of pages: 37846
• Number of files: 14564
• Number of users 4523
• Number of admins 11
• Number of pages in OWW NSTemplate:PAGESINNS:OpenWetWare:R

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