User:Agustino Martinez-Antonio

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Contact Info

Agustino Martínez-Antonio (an artistic interpretation)

• Agustino Martínez-Antonio
• Cinvestav-Campus Guanajuato
• Address: Km. 9.6 Libramiento Norte Carretera Irapuato-León Apartado postal 629, C.P. 36500 Irapuato Guanajuato, México.
• Email: amartinez@ira.cinvestav.mx

I work in the Genetic Engineering Department at Research and Advanced Studies Center of the National Polytechnic Institute (CINVESTAV-IPN). My research interest is in systems and synthetic biology.

Education

• 2001, PhD Biochemical Sciences, Biotechnology Institute of the National Autonomous University of Mexico.
• 1997, MS Biotechnology, Biotechnology Institute of the National Autonomous University of Mexico.
• 1993, BS Chemist-Biologyst, Faculty of Chemical Sciences of the Benito Juárez Autonomous University of Oaxaca

Research interests

1. Interest 1: Loops, switches, circuits within biological regulatory networks
2. Interest 2: Emergency of memory and social behavior
3. Interest 3: Engineering of new biological systems

Publications

1. Janga SC, Salgado H, Martínez-Antonio A, and Collado-Vides J. Coordination logic of the sensing machinery in the transcriptional regulatory network of Escherichia coli. Nucleic Acids Res. 2007;35(20):6963-72. DOI:10.1093/nar/gkm743 |
2. Salgado H, Martínez-Antonio A, and Janga SC. Conservation of transcriptional sensing systems in prokaryotes: a perspective from Escherichia coli. FEBS Lett. 2007 Jul 24;581(18):3499-506. DOI:10.1016/j.febslet.2007.06.059 |
3. Janga SC, Salgado H, Collado-Vides J, and Martínez-Antonio A. Internal versus external effector and transcription factor gene pairs differ in their relative chromosomal position in Escherichia coli. J Mol Biol. 2007 Apr 20;368(1):263-72. DOI:10.1016/j.jmb.2007.01.019 |
4. Salgado H, Santos-Zavaleta A, Gama-Castro S, Peralta-Gil M, Peñaloza-Spínola MI, Martínez-Antonio A, Karp PD, and Collado-Vides J. The comprehensive updated regulatory network of Escherichia coli K-12. BMC Bioinformatics. 2006 Jan 6;7:5. DOI:10.1186/1471-2105-7-5 |
5. Salgado H, Gama-Castro S, Peralta-Gil M, Díaz-Peredo E, Sánchez-Solano F, Santos-Zavaleta A, Martínez-Flores I, Jiménez-Jacinto V, Bonavides-Martínez C, Segura-Salazar J, Martínez-Antonio A, and Collado-Vides J. RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D394-7. DOI:10.1093/nar/gkj156 |
6. Martínez-Antonio A, Janga SC, Salgado H, and Collado-Vides J. Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli. Trends Microbiol. 2006 Jan;14(1):22-7. DOI:10.1016/j.tim.2005.11.002 |
7. Resendis-Antonio O, Freyre-González JA, Menchaca-Méndez R, Gutiérrez-Ríos RM, Martínez-Antonio A, Avila-Sánchez C, and Collado-Vides J. Modular analysis of the transcriptional regulatory network of E. coli. Trends Genet. 2005 Jan;21(1):16-20. DOI:10.1016/j.tig.2004.11.010 |
8. Salgado H, Gama-Castro S, Martínez-Antonio A, Díaz-Peredo E, Sánchez-Solano F, Peralta-Gil M, Garcia-Alonso D, Jiménez-Jacinto V, Santos-Zavaleta A, Bonavides-Martínez C, and Collado-Vides J. RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D303-6. DOI:10.1093/nar/gkh140 |
9. Martínez-Antonio A, Salgado H, Gama-Castro S, Gutiérrez-Ríos RM, Jiménez-Jacinto V, and Collado-Vides J. Environmental conditions and transcriptional regulation in Escherichia coli: a physiological integrative approach. Biotechnol Bioeng. 2003 Dec 30;84(7):743-9. DOI:10.1002/bit.10846 |
10. Martínez-Antonio A and Collado-Vides J. Identifying global regulators in transcriptional regulatory networks in bacteria. Curr Opin Microbiol. 2003 Oct;6(5):482-9. DOI:10.1016/j.mib.2003.09.002 |
11. Martínez A and Soberón-Chávez G. Characterization of the lipA gene encoding the major lipase from Pseudomonas aeruginosa strain IGB83. Appl Microbiol Biotechnol. 2001 Sep;56(5-6):731-5. DOI:10.1007/s002530100724 |

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Useful links

• ISI Researcher ID [[1]]
• Projects (spanish)[[2]]