Talk:Wikiomics:RNA-Seq

Splice analysers

SpliCQ

http://drupal.bio.ifi.lmu.de/SpliCQ

IsoLasso

http://www.cs.ucr.edu/~liw/isolasso.html

SpliceTrap

http://rulai.cshl.edu/splicetrap/ SpliceTrap is a method to quantify exon inclusion levels using paired-end RNA-seq data.

wapRNA

wapRNA

high-throughput RNA-Seq data (wapRNA) from next generation sequencing (NGS) platforms, such as Genome Analyzer of Illumina Inc. (Solexa) and SOLiD of Applied Biosystems (SOLiD). http://waprna.big.ac.cn/

Olego

New to check: http://ngs-olego.sourceforge.net/