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- Computational Tools (section SimThyr)SBW (Systems Biology Workbench) http://simthyr.sf.net Johannes W. Dietrich SimThyr is a continuous numeric simulation program for thyroid homeostasis. It...26 KB (3,556 words) - 00:05, 10 October 2016
- estimation on 8 core computer full ML with 700 seqs = 9 hours without bootstrapping using reference seq tree as a guide tree speeds it up to 1-2 hours...1 KB (202 words) - 21:50, 17 August 2017
- 2009) Done. Output alignment of source seqs and ref seqs and as well as an alignment of reads and ref seqs. (Source seqs are the sequences from which the reads...9 KB (1,514 words) - 22:20, 17 August 2017
- initializeTreeSeq(); } For the generation to be treated as the founder generation, include the command: <generation #> late() { ... sim.treeSeqRememberIndividuals(sim...20 KB (2,541 words) - 19:32, 13 December 2021
- Zhang Y, Liu XS: CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human. Bioinformatics 28 (2012) 1411-1412. Xiao...55 KB (7,535 words) - 21:26, 13 July 2020
- Simulations Martin's data is on bobcat.genomecenter.ucdavis.edu/AMPHORA website metaSim, JGI simulation paper (datasets available, not clear exactly how done) Make...2 KB (278 words) - 21:46, 17 August 2017
- Erickson C, Giertych B, Akhter H, Wang L, Stewart A, Parenti J, Wang B, Wen S, Sim S, Quenneville E, Hansen K, Frisch S, Hu G (2022) Matrix from urine stem cells...30 KB (4,827 words) - 22:33, 15 December 2025
- retriev orthog group information comp sig score for ecah group based on indiv seq seq score outputs sig score for orthog group - average likelihood of score within...7 KB (833 words) - 00:43, 27 June 2007
- sequences depends on which Illumina sequencer you used - currently NextSeq and HiSeq 4000 need the reverse complement 2) Make sure to save this file as a...106 KB (14,834 words) - 23:47, 6 February 2025
- the use valve on the empty tank get wrenches from the drawer under the MiSeq. They are big & adjustable. take off the regulator - can be physically difficult...30 KB (5,056 words) - 19:02, 5 March 2014
