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Showing results for snp1 seq. No results found for SNIP-Seq.
- Yeast Strains for Temperature-sensitive Growth on Solid Media Dahlquist:RNA-seq Protocol Yeast Colony PCR For genotyping yeast systematic deletion strains...20 KB (1,600 words) - 12:39, 16 January 2024
- precipitation SB DNA blot (Southern) Polyacrylamide gel electrophoresis DNA Seq Prep Cloning Protocol DNA Quantification Rapid plant gDNA extraction Amplified...10 KB (12 words) - 18:01, 31 August 2017
- first_fasta_DNA.seq second_fasta_DNA.seq dotter first_fasta_AA.seq second_fasta_AA.seq dotter first_fasta_DNA.seq second_fasta_AA.seq Note that the order...56 KB (6,022 words) - 13:26, 21 November 2012
- rsion-"$1".pade -b 50.0 --snps_file snpSeq_allsamples_"$1".fa --pos_file snp_positions_base0_speciesName_"$1".txt -a ancestral_speciesName_"$1".probs_snps_probs...15 KB (2,418 words) - 13:08, 7 November 2023
- this: (((((Xbir:1.0,Xmal:1.0):1.0,Xcor:1.0):1.0,((Xcon:1.0,Xmon:1.0):1.0,Xnez:1.0):1.0):1.0,(Xmul:1.0,(Xpyg:1.0,Xnig:1.0):1.0):1.0),Xvar:1.0); You'll get...102 KB (14,283 words) - 14:09, 31 May 2024
- annealed 1X Annealing Buffer, which is 10 mM Tris, 50 mM NaCl. The annealing program is: 95°C 5 minutes Ramp down -0.1°C every 2 seconds (or -1°C every...20 KB (3,149 words) - 10:52, 27 September 2017
- Wikiomics:Building phylogenetic trees Wikiomics:ChIP-chip Wikiomics:ChIP-seq Wikiomics:Cloning in silico Wikiomics:Collections of bioinformatics links...719 bytes (341 words) - 04:52, 3 March 2010
- Harvard:Biophysics 101/2007/Notebook:Christopher Nabel/2007-5-1 (section Change parse code to condense rsIDs and SNP seq lists from XML into a single dict file (appropriate input for code removing false SNPs))identified SNPs (we will integrate our two halves # in class tomorrow). # Parts go as follows: # 1. take input (dict file with rsID and keyed seq) # 2. align...5 KB (839 words) - 23:50, 30 April 2007
- Harvard:Biophysics 101/2007/Notebook:Christopher Nabel/2007-4-24 (section Write a script to parse out sequence data from dbSNP)do an omim search on each snp and 'print "yay we're done"' # error check for mis-matches for seq in e_seq: parsed_snp = seq updateseq = open('example.fasta'...6 KB (987 words) - 04:40, 24 April 2007
- the next loop for seq in sequences[index]: outHandle.write(seq + '\n') outHandle.close() def parseFasta(filePath): headers = [] seqs = [] fileHandle =...37 KB (4,470 words) - 12:11, 8 September 2010
- records = SeqIO.parse(file_handle, format="fasta") record = records.next() return record.seq.data lookup blast snp data def blast_snp_lookup(seq): result_handle...5 KB (618 words) - 17:13, 8 April 2007
- getElementsByTagName("gn1|dbSNP|")[0].childNodes) parsed.append(a) return parsed seq = open('sample_sequence.txt') rsID_array = [] for i in BLAST_SNP_search(seq): b = extract_rsID(i...3 KB (449 words) - 00:24, 20 March 2007
- records = SeqIO.parse(file_handle, format="fasta") record = records.next() return record.seq.data lookup blast snp data def blast_snp_lookup(seq): result_handle...5 KB (705 words) - 12:40, 15 April 2007
- records = SeqIO.parse(file_handle, format="fasta") record = records.next() return record.seq.data # lookup blast snp data def blast_snp_lookup(seq): result_handle...4 KB (702 words) - 21:55, 15 April 2007
- records = SeqIO.parse(file_handle, format="fasta") record = records.next() return record.seq.data lookup blast snp data def blast_snp_lookup(seq): result_handle...15 KB (2,256 words) - 01:19, 3 May 2007
- Wikiomics:RNA-Seq (section Alexa-Seq)for RNA-Seq mapping. Output often processed with Cufflinks. Latest version supports TopHat detection of insertions and deletions using RNA-Seq data. Supports...12 KB (1,677 words) - 02:50, 30 September 2014
- perl merge_files_using_two_columns_sharing_values.pl file1 column1_file1 column2_file1 file2 column1_file2 column2_file2 Subset an MSG genotypes file based...32 KB (4,368 words) - 15:10, 8 June 2023
- records = SeqIO.parse(file_handle, format="fasta") record = records.next() return record.seq.data lookup blast snp data def blast_snp_lookup(seq): result_handle...22 KB (3,307 words) - 03:25, 3 May 2007
- parse if is in CDS or not, and for former the CDS , asc#, and seq, and for latter the seq. info and surrounding genes Katie code returns BLAST XML data...7 KB (725 words) - 06:10, 3 May 2007
- parsed def parseSNP(snp_id): SNP_URL = 'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=snp' url = SNP_URL + '&id=' + snp_id + '&mode=xml'...4 KB (541 words) - 06:42, 1 May 2007
